Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5034 ATGGAAATTCGCTGTTTTTCCATGGCGATGGTGTTTCTAGTTTTACTAATCAATCTGAGAGAGACCGCGGCGGTTCCCTCCGCGGTGTACGACGGCGGCGTGTTGTTTCCTGACCGGAGATGCAGGGAGGACAGAGAAACGGTGTCGCCGGGGAACTTGACTCGTCGGAGGACGGAGGCGGTGGGAGGATGTGAGGTGTGGAGTGAGGCGTGTTCGGAGGCGGTGATGAAGGTGGCGCGGAGGCCGGAGATGGCGGAGTGGTTGAAGCGGTTACGGAGGAGGATCCACTCGAATCCGGAGTTGGCTTTTGAGGAAATCGAGACGAGTGGTTTGATTCGAAAGGAGTTGGATCTGATGGGAGTTAGTTATCGGTACCCGTTGGCGAGGACCGGTATTCGAGCGTGGATCGGTACTGGGGGTCCGCCTTTTGTTGCAATTCGAGCTGACATGGATGCACTTCCCATCCAGGAAGCTGTGGAGTGGGAGTACAAGTCTAAAGTTGCCGGTAAAATGCACGCTTGTGGACACGACGCACATGTGGCGATGCTTATTGGTGCTGCTAAGATCTTGAAAACTAGAGAACATTTATTAAAGGGAACTGTAATTCTGATATTCCAGCCAGCAGAGGAAGCTGGCAATGGTGCAAAGCGAATGATGCAAGACGGTGCTTTGGAGGATGTGGAGGCTATATTTGCAGTTCATGTATCCCATGAGCATCCAACTGGTATAATTGGGTCTAGACCTGGACCCTTGTTGGCTGGGTGTGGTTTTTTCAGAGCTGTAATTAGTGGCAAAACAGCCATTGCTGGCAATCCTCAACGCTCTGTTGATCCAGTTTTGGCTGCTTCAGCTGCAGTTATCAGCTTGCAGGGTATTGTCTCTCGCGAATCAAATCCCTTGGATTCACAGGTTATCTCTGTAACATCGTTTGATGGAGGCAACAATCTTGACATGATTCCAGACAGAGTGGTCATTGGGGGAACATTCAGAGCTTTCTCTAACACCAGCTTTTACCAGATACTTGAAAGAATAGAGCAGGTGATAGTGGAACAGGCCAGAGTCTACAGATGCTCAGCTGAAGTTGACTTCTTTGAAAAAGAGTACACAATATACCCGCCAACAGTCAACGATGACAGAATGTATGAGCATGTGAAGAAAGTTTCCATCGATTTGCTGGGTCAAGAAAATTTCAGGGTAGTCCCACCTATGATGGGTGCTGAAGATTTCTCTTTTTACTCAGAGGCAGTTCCTTCAGCTTTCTACTACATAGGGATAAGGAACGAGACACTAGGGTCCACTCACACAGGACACTCCCCATATTTCATGATTGATGAAGATGCTCTGCCAACAGGGGCTGCTGTTCATGCCACCATTGCTGAGAGGTACCTCATTGAACATAGCTGA 1404 0.4915 MEIRCFSMAMVFLVLLINLRETAAVPSAVYDGGVLFPDRRCREDRETVSPGNLTRRRTEAVGGCEVWSEACSEAVMKVARRPEMAEWLKRLRRRIHSNPELAFEEIETSGLIRKELDLMGVSYRYPLARTGIRAWIGTGGPPFVAIRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKTREHLLKGTVILIFQPAEEAGNGAKRMMQDGALEDVEAIFAVHVSHEHPTGIIGSRPGPLLAGCGFFRAVISGKTAIAGNPQRSVDPVLAASAAVISLQGIVSRESNPLDSQVISVTSFDGGNNLDMIPDRVVIGGTFRAFSNTSFYQILERIEQVIVEQARVYRCSAEVDFFEKEYTIYPPTVNDDRMYEHVKKVSIDLLGQENFRVVPPMMGAEDFSFYSEAVPSAFYYIGIRNETLGSTHTGHSPYFMIDEDALPTGAAVHATIAERYLIEHS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5034 467 PIRSF Amidohydrol_AmhX 76 467 IPR017439 GO:0016787
Lja1g5034 467 Pfam Peptidase family M20/M25/M40 145 460 IPR002933 GO:0016787
Lja1g5034 467 SUPERFAMILY Zn-dependent exopeptidases 82 465 - -
Lja1g5034 467 TIGRFAM amidohydrolases: amidohydrolase 90 451 IPR017439 GO:0016787
Lja1g5034 467 SUPERFAMILY Bacterial exopeptidase dimerisation domain 253 372 IPR036264 -
Lja1g5034 467 CDD M20_IAA_Hyd 88 463 IPR044757 GO:0009850|GO:0016787
Lja1g5034 467 Gene3D Zn peptidases 90 456 - -
Lja1g5034 467 Pfam Peptidase dimerisation domain 258 353 IPR011650 -
Lja1g5034 467 Gene3D - 253 372 - -
Lja1g5034 467 PANTHER PEPTIDASE M20 FAMILY MEMBER 42 466 IPR017439 GO:0016787
Lja1g5034 467 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 42 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5034 Lja-Chr1 70894864 70901785 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5034 K21604 K14664 gmx:100785666 771.155