Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5023 ATGCCAGCTTCCCCTTCAGAAAACCGAACCAAATGGAGGAAGCGGAAGCGGGACTCCCAAATCAGCCGCCGGAAGCACCACGAGGACGACGACGACGACGAGGAAAACCCCAACGCGGCGGAGGACGACCACCACGACTACGACGACTCCGAGGACCACAACCACAACCACAACCACCCTAATTCCCAACCGCACCACCACGAGATGGAGGTTCTGTCAGATCACCCGGTCCAGATTTCGGTGTTCCCGTTGGTGGTGAAGCGCACCGTCAACCGCCCTCACTCCTCCGTCGCCGCAATCGTGGCTCTTGAACGAGCTATTGAGTTGGGAGATAGTGGCAGCAACAGCAACAAGGGTCAGGTGCAGAACCCTACTCCGTTGCTGGAGAATGTGTCATACGGCCAGCTTCAGGCGCTCTCCGCCGTGCCCTCTGATAGCTCCGCTTTCGATCAGGACCGCGGTGATTCCTCTTGTGTCATCACTCCACCCCCTATTTTGGAAGGCCGTGGCGTTTCTAAGCGCTTTGGAAACAAGGCTCTTGTGCTCCCAATGCATTCAGATTGGTTTTCACCGGCCACCGTGCATAGGCTAGAGAGACAGGCGGTGCCCCATTTCTTTTCTGGGAAATCGGCGGATCATACGCCAGAGAAGTACATGGAATGTAGGAATTGCATTGTTGCACTGTACATGGAGGATCTGGGGAAGAGGATTACTGTCGCTGACTGCCAAGGATTGGTGGTTGGGGTTGATCAAGAAGATCTGGCTAGAATTGTCCGGTTTCTTGATCACTGGGGAATTATCAATTACTGTGCTCGGACGCCTGAGCTTCCGAATGCTGTGTCCAGCCTGAAGGAAGACACGGGTGGAGAGGTCCGTGTGCCGTCTGAGGCTTTGAAATCCATTGATAGTTTGATCAAATTTGACAATCCGAAGTGTAAGCTCAAAGCAGATGAAATTTATTCATCATTGACAATGCATAATGCTGATTCCCCTGATCTTGACGACAGAATAAGAGAGCATTTGTCTGAAAATCATTGCAATTATTGCTCTCGTCCTCTTCCTGTAGTATACTATCAGTCTCAAAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCATTGGTCATTCAAGTATAGATTTTATGAGGGTGGATTCAACAAGAGATTATGGTGAACTAGATGGGGAAAGTTGGACTGATCAAGAAACTTTGTTGCTGCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCGGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTTCGTCTACCCATGGAGGATGGAAAATTGGAAAATATCAATGTTCCAAGCATGTCTTTATCATCCAGTGTCATGAATAGAGATGATAATGGAAGATTGCATCATCATTTAAATGGGGATTCTGCTGGACCCATCCATCAAAGCCGAGAGTCTGACAGCCGTCTGCCTTTTGCAAATTCTGGAAATCCTGTTATGGCTCTGGTTTCCTTTTTAGCCTCTGCCGTTGGACCAAGAGTAGCTGCGTCTTGTGCTCATGCAGCATTAGCAGTATTGTCAGAGGATGGTTCTGGCAGTACATCACAGACAGAAGCACCAGGACACGATAATAGGACAAATGCAGAAAGCGTTCATGCTAGAGATGGTGGCCCTCATGGAGAAACTGCAAATTCAATTAATCATAATGAGGATAAGGCAAAAATGCGTAGTACACGGGGTCAAAGTGAAGGTCGGACAACCCCACTCTCTGCTGAGAAAGTTAAAGATGCAGCTAAAGCAGGCCTCTCTGCGGCAGCAATGAAAGCTAAATTGTTTGCTGATCACGAAGAACGTGAAATTCAGAGGTTATGCGCCAATATAGTTAATCATCAGTTGAAAAGACTGGAATTGAAGCTGAAACAGTTTGCAGAAATTGAAACATTACTGATGAAAGAATGTGAACAAGTAGAAAGGGCAAAGCAGAGGTTTGGTGCTGAACGGTCTCGCATTATATCGGCACATTTTGGAACTGCAGGAGCCACACCTCCAATGAATGCATCAGGTGTTGGTCCTTCAGTGGCTAGTAATAATGGCAACAATAGGCAACAAATTGCTTCTCCCTCACAGCCCAGCATCTCAGGGTATGGCAACAGCCAACCGGTTCATCCACATATGTCCTTTGCCCCGCGACCTTCAATGTTTGGGTTGGGGCAAAGATTGCCCCTGTCTATGATACAACAATCACAATCAGCAGCTTCTTCAACTGGCATGTTCAATGCTCCTAGTAATGTGCAATCGAGTACCAATCACCCATTGTTGAGGCCTGTGTCAGGAACTAACTCAGGTTTAGGTTAA 2376 0.4722 MPASPSENRTKWRKRKRDSQISRRKHHEDDDDDEENPNAAEDDHHDYDDSEDHNHNHNHPNSQPHHHEMEVLSDHPVQISVFPLVVKRTVNRPHSSVAAIVALERAIELGDSGSNSNKGQVQNPTPLLENVSYGQLQALSAVPSDSSAFDQDRGDSSCVITPPPILEGRGVSKRFGNKALVLPMHSDWFSPATVHRLERQAVPHFFSGKSADHTPEKYMECRNCIVALYMEDLGKRITVADCQGLVVGVDQEDLARIVRFLDHWGIINYCARTPELPNAVSSLKEDTGGEVRVPSEALKSIDSLIKFDNPKCKLKADEIYSSLTMHNADSPDLDDRIREHLSENHCNYCSRPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFMRVDSTRDYGELDGESWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSSVMNRDDNGRLHHHLNGDSAGPIHQSRESDSRLPFANSGNPVMALVSFLASAVGPRVAASCAHAALAVLSEDGSGSTSQTEAPGHDNRTNAESVHARDGGPHGETANSINHNEDKAKMRSTRGQSEGRTTPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFGAERSRIISAHFGTAGATPPMNASGVGPSVASNNGNNRQQIASPSQPSISGYGNSQPVHPHMSFAPRPSMFGLGQRLPLSMIQQSQSAASSTGMFNAPSNVQSSTNHPLLRPVSGTNSGLG* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5023 791 Coils Coil 620 640 - -
Lja1g5023 791 MobiDBLite consensus disorder prediction 1 67 - -
Lja1g5023 791 SUPERFAMILY Homeodomain-like 180 274 IPR009057 -
Lja1g5023 791 ProSiteProfiles Myb-like domain profile. 403 446 IPR001005 -
Lja1g5023 791 MobiDBLite consensus disorder prediction 572 586 - -
Lja1g5023 791 ProSiteProfiles SWIRM domain profile. 180 278 IPR007526 GO:0005515
Lja1g5023 791 Gene3D - 400 450 - -
Lja1g5023 791 SMART sant 400 448 IPR001005 -
Lja1g5023 791 MobiDBLite consensus disorder prediction 40 67 - -
Lja1g5023 791 MobiDBLite consensus disorder prediction 695 727 - -
Lja1g5023 791 CDD SANT 403 445 IPR001005 -
Lja1g5023 791 Pfam Myb-like DNA-binding domain 403 445 IPR001005 -
Lja1g5023 791 MobiDBLite consensus disorder prediction 535 551 - -
Lja1g5023 791 Gene3D - 186 273 IPR036388 -
Lja1g5023 791 MobiDBLite consensus disorder prediction 463 499 - -
Lja1g5023 791 ProSiteProfiles SANT domain profile. 399 450 IPR017884 -
Lja1g5023 791 MobiDBLite consensus disorder prediction 535 601 - -
Lja1g5023 791 MobiDBLite consensus disorder prediction 752 791 - -
Lja1g5023 791 SUPERFAMILY Homeodomain-like 401 454 IPR009057 -
Lja1g5023 791 PANTHER SWI/SNF COMPLEX-RELATED 59 790 - -
Lja1g5023 791 Pfam SWIRM domain 183 269 IPR007526 GO:0005515
Lja1g5023 791 Pfam SWIRM-associated region 1 607 680 IPR032451 -
Lja1g5023 791 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 59 790 - -
Lja1g5023 791 MobiDBLite consensus disorder prediction 683 739 - -
Lja1g5023 791 ProSiteProfiles Zinc finger ZZ-type profile. 341 395 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5023 Lja-Chr1 70498607 70506853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5023 346 442 EF-hand Containing Proteins AT3G07740 33.962 7.74e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5023 K11649 - gmx:100780440 1233.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5023 1 70498607 70506853 Lja1g5023 1 70498607 70506853 ECH