Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5013 ATGCAAGCTTCACAACACACACAATCAGTAGTAACAATGAAACCACACCACTTACCTTTTCTGTTGATAGTGTTGCTGTTCCCACTATGTTTAGCATCTGAGGAGGAGCAAAGCATCATCTTCACCACACTTGGCAGAGCTTTCTACTCCTTCGACATCTACTCCCTCCCGATTCACCACCACCAACCACCCTCCCCTCACGACGAGCTTCGACTCACCGACGGCCGCTCCGTCAATTTCAACGGCCAATTCCTCGCCAACAACACCGCCATCCAACTCCCTACTGACCCACCTCCTCCCCTGCAACTCGTTTACGTCACCGAGAGAAGCGGCCTCCCCACCATCTACTACGACGCCGTTTACACCACCGCGACCACCACCACAAGAAGATCTGCCCTCGAATCATTCACCACAGAGAGAATCCAACTCCCTCTGTTACCGAATCATCTCGGTGAAGCTCAAGTTTCCATCAAAGACAAGCCTAGCGTGACCAGCGATGGTGAGTATTTGGTGTATGTGTCGACCCATGAAGACCCAGGTGTGTCCCGGGTCAGTTGGGCTGCGGTTTACTCCACCCACCTCAAATCGGGTCTGACCCGACGGCTCACCCCTCACGGCGTCGCTGATTTCAGCCCCGCCCTGTCCCCCTCCGGTGTGTGGACTGCGGTCGCCTCCTACGGAAGCGCTGGATGGTCCGGCGAGGTGGAGGATCTCACCACAGACATCTACATCTTCCTGACTCGCGACGGAACTAACCGGGTCAAGGTGGTCGAGCACGGTGGCTGGCCTTGCTGGGTCGACGATCGCACGATTTACTTTCACCGGAGAGGCGATGACAAGTGGTGGAGCATTTACAGAGCCACCCTCCCCGCCGATTCCGCTGACTCGGTGGTCGTTGAACGAGTCACGCCACCGGGTCTCCACGCGTTCACTCCCGCGACCTCACCGGGAAACCACGAGTTCATCGCCGTCGCTACGAGAAGGCCAGGTTCAAGTTTCCGCCACATCGAGCTGTTCAACCTGGTTAACAAAGAGTTCAGGGAGCTTACTCGCTTCGTCTCACCCCGTTCCCACCATCTCAACCCGTTCATCTCACCCGATTCGTCCCGGGTCGGATACCACAAGTGCAGAGGAGAATCCAGCAACAAAAGCCCCCAGTTCTTGCTCGAGAATGTTCAGAGCCCTGTTCCCGGCCTAACCCTCTTCCGCTTCACCGGTTCATTTCCCGTTTTCTCACCCTCCGGCGACCAAATCGCTTACGTGGAGATGCCGGGAGTTTACGTCGTGAACCGGGACGGTTCAAACCTGCGGAAGGTTTCCGACGCGATGGCGTTCTCAACCGCGTGGGACCGTGTCCGACCTGGCGTCATCTACACCGCCATCGGAGAAACCTTTGCCCCGGAGAGCGCCGGGGTTGACATCGTCTCCATCGACGTTGACCGTAACACCATCAAGAAGTTGACTGTCAATGGAATGAACAACGCGTTCCCGTCACCTTCACCGGACGGGAAATGGATCGTGTTCCGGTCGGGTCGGACGGGTCACAAGAATCTCTACATGATGGATGCAGTTGGTGGAGAGAGAAAGGGACTTAGAAGGTTGACGGAGGGTCCATGGACGGACACCATGTGCAATTGGTCACCGGACGGAGAATGGATCGCTTTTGCTTCTGACCGCCATGACCCGGGTAGTGGTAGCTTCGAGCTTTACCTGATCCACCCGAATGGAACCGGGTTGAGGAAGGTGATTCAGAGCGGGTCGGGTGGGAGGACGAACCACCCGTATTTCAGCCCTGACGGGAAGAATTTGGTGTTCACGTCGGACTATGCGGGCATATCAGCAGAGCCAATCTCAAACCCGCACGCCTACCAGCCCTATGGTGAAATATTCACCATTGGGTTTGACGGTTCGGGTTTAAAGAGGTTGACCCATAATTCATATGAGGATGGAACCCCAGCTTGGGCACCAAAGTATATGAAGCCTGTGAATGTTGAGAGGCCTAAGGGTGGACTTTATTGCTCTTTTGAAGATTGTCATTGGCTCAATGACTTTCCCAATAGGATGGCTTTGGGTCTGCCTTCTTGCCCTTACTCTATCCCTTTATCAAAGCCTCAATGTGGTGTGTGA 2127 0.5515 MQASQHTQSVVTMKPHHLPFLLIVLLFPLCLASEEEQSIIFTTLGRAFYSFDIYSLPIHHHQPPSPHDELRLTDGRSVNFNGQFLANNTAIQLPTDPPPPLQLVYVTERSGLPTIYYDAVYTTATTTTRRSALESFTTERIQLPLLPNHLGEAQVSIKDKPSVTSDGEYLVYVSTHEDPGVSRVSWAAVYSTHLKSGLTRRLTPHGVADFSPALSPSGVWTAVASYGSAGWSGEVEDLTTDIYIFLTRDGTNRVKVVEHGGWPCWVDDRTIYFHRRGDDKWWSIYRATLPADSADSVVVERVTPPGLHAFTPATSPGNHEFIAVATRRPGSSFRHIELFNLVNKEFRELTRFVSPRSHHLNPFISPDSSRVGYHKCRGESSNKSPQFLLENVQSPVPGLTLFRFTGSFPVFSPSGDQIAYVEMPGVYVVNRDGSNLRKVSDAMAFSTAWDRVRPGVIYTAIGETFAPESAGVDIVSIDVDRNTIKKLTVNGMNNAFPSPSPDGKWIVFRSGRTGHKNLYMMDAVGGERKGLRRLTEGPWTDTMCNWSPDGEWIAFASDRHDPGSGSFELYLIHPNGTGLRKVIQSGSGGRTNHPYFSPDGKNLVFTSDYAGISAEPISNPHAYQPYGEIFTIGFDGSGLKRLTHNSYEDGTPAWAPKYMKPVNVERPKGGLYCSFEDCHWLNDFPNRMALGLPSCPYSIPLSKPQCGV* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5013 708 Pfam WD40-like Beta Propeller Repeat 493 520 IPR011659 -
Lja1g5013 708 Pfam WD40-like Beta Propeller Repeat 592 608 IPR011659 -
Lja1g5013 708 Pfam WD40-like Beta Propeller Repeat 532 570 IPR011659 -
Lja1g5013 708 Gene3D - 564 670 IPR011042 -
Lja1g5013 708 Gene3D - 268 458 IPR011042 -
Lja1g5013 708 Gene3D - 102 267 IPR011042 -
Lja1g5013 708 Gene3D - 459 563 IPR011042 -
Lja1g5013 708 SUPERFAMILY Tricorn protease N-terminal domain 312 581 - -
Lja1g5013 708 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 37 677 - -
Lja1g5013 708 SUPERFAMILY Tricorn protease N-terminal domain 161 348 - -
Lja1g5013 708 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 37 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5013 Lja-Chr1 70383582 70386268 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5013 - - aprc:113853220 1100.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5013 1 70383582 70386268 Lja1g5013 1 70383582 70386268 ECH