Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5004 ATGATTAAGATTTGCAACCCTAGGAAAAAATTACTATGTAAATTTGTGTCATTTGCTAGAATGCTAAGCACAGGTGAACCACCACCTCAGGAGGTTGCTGATTTAACCGAAACAGTGTGCAAGGTTATGATGTCTTCACCCGGGGTGACACTTGACGCTGCTCTTAATCAAACTGGGGTTAGGGCATCCCCTGAATTAGTAGAGAATGTCCTCAAGAGGTTTGAGAATGCGGGCATGTCGGCGTTTCGGTTCTTCGAGTGGGCGGAGAGGCAGAGGAATTACGCGCACACCGTCAGGGCGTACCACTTGATGATTGAGTCTTTGGCCAGGATTAGGCAGTATCAGATCATGTGGGACATTGTCACGAAAATGAGGAACAAGGGCATGCTAAATGTTGAAACTTTTTGTATTGTTATGCGAAAGTATGCTAGGGCTCACAAGGTGGATGAGGCGGTTTACACGTTTAACGTCATGGATAAGTATGAGGTGCCTCAGAATCTTGCTGCTTTTAATGGTTTGCTGAGTGCTTTGTGTAAGTCTAGGAATGTGAGGAAGGCTCAGGAGATTTTTGATAGTATGAAGGGTCGCTTCGAGCCGGATTTGAAAACTTATAGCATATTGCTTGAGGGGTGGGGAAAGGATCCGAATCTTCCCAAAGCAAGGGAGACTTTCAGAGAGATGGTTTCCGCGGGATGCAGCCCGGATGTTGTTAGTTATGGTATAATGGTTGACATTCTTTGCAAAGCAGGGAGAGTTGATGAAGCTGTTGAGGTTGTCAAGGATATGGATGACAACAATTGCATGCCAACATCTTTCATTTATAGTGTCCTGGTTCATACTTATGGAGTGGAAAACCGGATTGAAGATGCTATCGACGCGTTTCTGGAGATGGAAAGGAAGGGAATCAAGGCTGATGTTGTGGTGTATAATGCGTTGATTGGTGCTTTTTGTAAAGCAAATAAGTTTAAAAATGTGCGTAGGGTCTTAAAAGAGATGGAAAGCAATGGGGTCACTCCCAATTCAAGGACCTGCAATGTTATCATAAGCAGTTTGATTAGCCAGGGGCGGACTGACAGAGCTTTTGAAGTTTTCCGCCGGATGATCAAGATATGCGAACCGGATGCTGATACTTACACAATGATGATAAAAATGTTTTGTGAGAGAAATGAAATGGATATGGCTATGAAAATATGGAAGTATATGAAGTCAAAAAGGTTTGTCCCAAGCCTGCACACCTTTTCAGCCCTTATCAATGGGTTGTGTCAAAACGGCAATGCTATGAAAGCTTGTGTTTTGCTGGAAGAGATGATAGAGAAGGGAATTCGACCATCGCGTGTTACATTTGGGAAGTTAAGACAGCTGCTTATAAAGGAGAAGAGGGAGGACGTGCTCACATTTCTGCATGAGAAAATAAACCTTCTTGTCAAGGAGCCTTTGTGCGACTAA 1446 0.4364 MIKICNPRKKLLCKFVSFARMLSTGEPPPQEVADLTETVCKVMMSSPGVTLDAALNQTGVRASPELVENVLKRFENAGMSAFRFFEWAERQRNYAHTVRAYHLMIESLARIRQYQIMWDIVTKMRNKGMLNVETFCIVMRKYARAHKVDEAVYTFNVMDKYEVPQNLAAFNGLLSALCKSRNVRKAQEIFDSMKGRFEPDLKTYSILLEGWGKDPNLPKARETFREMVSAGCSPDVVSYGIMVDILCKAGRVDEAVEVVKDMDDNNCMPTSFIYSVLVHTYGVENRIEDAIDAFLEMERKGIKADVVVYNALIGAFCKANKFKNVRRVLKEMESNGVTPNSRTCNVIISSLISQGRTDRAFEVFRRMIKICEPDADTYTMMIKMFCERNEMDMAMKIWKYMKSKRFVPSLHTFSALINGLCQNGNAMKACVLLEEMIEKGIRPSRVTFGKLRQLLIKEKREDVLTFLHEKINLLVKEPLCD* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5004 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Lja1g5004 481 Pfam PPR repeat family 166 210 IPR002885 -
Lja1g5004 481 Pfam PPR repeat family 305 351 IPR002885 -
Lja1g5004 481 Pfam PPR repeat family 373 422 IPR002885 -
Lja1g5004 481 TIGRFAM PPR: pentatricopeptide repeat domain 237 270 IPR002885 -
Lja1g5004 481 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Lja1g5004 481 TIGRFAM PPR: pentatricopeptide repeat domain 169 195 IPR002885 -
Lja1g5004 481 TIGRFAM PPR: pentatricopeptide repeat domain 377 409 IPR002885 -
Lja1g5004 481 TIGRFAM PPR: pentatricopeptide repeat domain 134 163 IPR002885 -
Lja1g5004 481 TIGRFAM PPR: pentatricopeptide repeat domain 343 369 IPR002885 -
Lja1g5004 481 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Lja1g5004 481 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Lja1g5004 481 TIGRFAM PPR: pentatricopeptide repeat domain 411 444 IPR002885 -
Lja1g5004 481 SUPERFAMILY TPR-like 96 398 IPR011990 GO:0005515
Lja1g5004 481 Pfam PPR repeat 231 262 IPR002885 -
Lja1g5004 481 Gene3D Tetratricopeptide repeat domain 265 368 IPR011990 GO:0005515
Lja1g5004 481 Gene3D Tetratricopeptide repeat domain 194 264 IPR011990 GO:0005515
Lja1g5004 481 Gene3D Tetratricopeptide repeat domain 369 442 IPR011990 GO:0005515
Lja1g5004 481 Gene3D Tetratricopeptide repeat domain 41 193 IPR011990 GO:0005515
Lja1g5004 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Lja1g5004 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 370 IPR002885 -
Lja1g5004 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Lja1g5004 481 PANTHER OS03G0761300 PROTEIN 10 478 - -
Lja1g5004 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Lja1g5004 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Lja1g5004 481 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 478 - -
Lja1g5004 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Lja1g5004 481 Pfam PPR repeat 134 160 IPR002885 -
Lja1g5004 481 Pfam PPR repeat 273 302 IPR002885 -
Lja1g5004 481 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 196 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5004 Lja-Chr1 70235527 70238443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5004 44 462 Glycosyltransferase AT1G05670 23.529 1.77e-39 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5004 - - gmx:100790096 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5004 1 70235527 70238443 Lja1g5004 1 70235527 70238443 ECH