Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5002 ATGGAGCTGCCGGAGTGCCCAGTGTGCCTCGAATCCTACGACGACGGCGCGGCGGTTCCTCGGGTCCTATCGTGCGGCCACACCGTCTGCGAGGCCTGCCTGGCGGAACTCCGTCACCGGTACCCGAATACAATCCGGTGCCCCGCTTGTACCCGACTCGTCAAGTACCAATCCCCTTCTTCTCTTCCAAAGAACATCGACCTCCTCAGACTCTGCCTGCAACAATCCTCTTCCTCTGATCATCGCTCGCGGAAGCCGAATCACCGGTCCACGATCAACGATGACGATGATCGACCTGGATTCTGGTCCGATGAGTTCTATGCCAATTGGAAGGACTGGATTCTCCCGCACGACACCGTTTTGGTCGACGACGACGGTGTTCGCCGGTTCGGTTCGGGGTCTAAGGGAAGGGCTTGCTTCGGGGTGAACCACGCTGTGAGTATCGTTGATGTAATTTCCTTGCCTCATGTGAGTGATTCGGTTACTGGGTTCAAGTTTAGTTATGTTGCTTGGGTGATCAAGTGTTTGATGGGGATGAGCGAGGTTGTGAGGGAGGGGTTAGGGTTGATTCTAGAAGCTTCCGTGAGGCGGAGTAGGGTTTGTAGGGTTTATGGGTTGTGGTGTGAGGTGGTGGGTGGGCCTTTGTATTTGGTGAGTGAGAGGCACTGTGGTAGTCTTTTGGAGAAGTTTAGGGAATTGAAGGATGGGTTTGTTGGTGTCAGTGGGGATAAGGGTTGGGTTTTCAGTTTTGTAGTGGTTGGAAAGGGGTTGTGTGAAGCTGTGCTAGCTTTGCATTTGGAAGGTTTGGTTGCTGGGTGCTTGGGACTTTCCTGCTTCTCTTCTGATGAGCTTGGTGGGGTTTGTATTGATTTGAATGAGGTGTTGGTGATGGGAAGGAAGATTAAGGGTGATGTTTCTGGTGGCGCGGGTGATAAACATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAATGTGTAAGGATTGTTTGCGAAATGAGCTTTTCGTAAGTCCAGAGGTTTGGTTTAGGTTGTTGCAAAAGGGGGCTGTTGCTCCTGAGAGTGGACATTCAAGGTATCCAATTGGGTATGGCTCAGATGTGTGGTCATTGGCCTGTATACTTCTGTGGCTTCTTATTGGAGATGCACTCCCTCGGAATACCTTGGAAATGAAGGATGAGGGTGATGGCCTTGATGTCTCAGCTAGTTACGTTTCTTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGAGAAATTAGGCTCTGAATATCTATCACTGGGACAGACACTTTGCAGATGTTTGGACATCAATCCAGGAAACCGTCCAGATGTGGTGGATGTGAGGAAATGCATTCAGGATATGCTAGTGGAACCTCAATTTGATTTTCTGGGCAATTTGGAGGTCACCCTAAATAGGAACAAGCCATGTCACTGCTTGATTCTTGCGGAATTGTGTCAGTTAACTAAGGAAAGTTCCAAGGAGCAAAGAGAATTTGAGTTGCAGGAGAAAGGAGATGGTGGTCAACCAGATTTTGTTCAAGATGGGGAAGACGAATCTAATGAAGACTTTACTGCTGGCCTATCTGAGGGGATGACTGAACTTAAAGTTCTGCAAGGTCATCTAGATTGTATCTCTGGCTTGGCTGTTGGAGGGGGGTATCTGTTTAGCTCCTCATTTGATAAAACTGTCCATGTGTGGTCCTTGCAGGACTTTTCTCGTTTACACACATTTAGAGGTCATCAGAGTAAAGTCATGGCTCTAGTTTATGTAGACGAAGAAGAACCATTGTGCATAAGTGGTGACAATGGAGGGGGCATATTTATCTGGGGAATTACTGCACCACTTGGGCAAGATCCCTTGAGGAAATGGTATGAGCAGAAGGATTGGCGCTTTAGTGGTATCCATTGCTTGACTGTTTCCAGAAATCATTGTCTCTACACTGGAAGTGGAGATAGAACAATAAAAGCCTGGTCATTAAAGGATGGAACTTTGATGTGCACTATGAATGGCCATAGATCTGTAGTTTCCACACTTGCAGTATGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCATTCGATTGTGGAGTCTTGATGATCACAGCCCATTGACGGTACTGGGGGAAGATTTGCCTGGAGAGATGAAGTCTATCCTGGCTATGACTGTCGATAGGCATTTGCTTGTTGCAGCATATGAGAATGGAATCATTAAGGTCTGGAGAAACGATGTATTCATGAATTCCAAAACATTGCAAAATGGAGCCATCTTTGCTATGAGTATGCACGGAAAATGTCTTTATACAGGAGGTTGGGACAAAAAGGTTAATATACAGGAATTATCAGGAGATGAGTTTCAACTCGATGTCAAAGCATTTGGATCCATTTCTTGCAGTTCCGTTGTTACAGCTATATTATGCCGCCAAAGAAAACTTTATGTTGGATATGCTGACAAGTCTATAAAGGTGTATGATTGTAAATAG 2508 0.4625 MELPECPVCLESYDDGAAVPRVLSCGHTVCEACLAELRHRYPNTIRCPACTRLVKYQSPSSLPKNIDLLRLCLQQSSSSDHRSRKPNHRSTINDDDDRPGFWSDEFYANWKDWILPHDTVLVDDDGVRRFGSGSKGRACFGVNHAVSIVDVISLPHVSDSVTGFKFSYVAWVIKCLMGMSEVVREGLGLILEASVRRSRVCRVYGLWCEVVGGPLYLVSERHCGSLLEKFRELKDGFVGVSGDKGWVFSFVVVGKGLCEAVLALHLEGLVAGCLGLSCFSSDELGGVCIDLNEVLVMGRKIKGDVSGGAGDKHEEEEEEEEEEEEEEEEEEEAMCKDCLRNELFVSPEVWFRLLQKGAVAPESGHSRYPIGYGSDVWSLACILLWLLIGDALPRNTLEMKDEGDGLDVSASYVSWVEKVSSVLEEKLGSEYLSLGQTLCRCLDINPGNRPDVVDVRKCIQDMLVEPQFDFLGNLEVTLNRNKPCHCLILAELCQLTKESSKEQREFELQEKGDGGQPDFVQDGEDESNEDFTAGLSEGMTELKVLQGHLDCISGLAVGGGYLFSSSFDKTVHVWSLQDFSRLHTFRGHQSKVMALVYVDEEEPLCISGDNGGGIFIWGITAPLGQDPLRKWYEQKDWRFSGIHCLTVSRNHCLYTGSGDRTIKAWSLKDGTLMCTMNGHRSVVSTLAVCDEVLYSGSWDGTIRLWSLDDHSPLTVLGEDLPGEMKSILAMTVDRHLLVAAYENGIIKVWRNDVFMNSKTLQNGAIFAMSMHGKCLYTGGWDKKVNIQELSGDEFQLDVKAFGSISCSSVVTAILCRQRKLYVGYADKSIKVYDCK* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5002 835 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Lja1g5002 835 SMART ring_2 6 50 IPR001841 -
Lja1g5002 835 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 676 708 - -
Lja1g5002 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 584 IPR001680 GO:0005515
Lja1g5002 835 Gene3D - 535 626 IPR015943 GO:0005515
Lja1g5002 835 Gene3D Transferase(Phosphotransferase) domain 1 322 470 - -
Lja1g5002 835 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Lja1g5002 835 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 2 834 - -
Lja1g5002 835 SMART WD40_4 669 706 IPR001680 GO:0005515
Lja1g5002 835 SMART WD40_4 624 666 IPR001680 GO:0005515
Lja1g5002 835 SMART WD40_4 797 833 IPR001680 GO:0005515
Lja1g5002 835 SMART WD40_4 709 750 IPR001680 GO:0005515
Lja1g5002 835 SMART WD40_4 578 618 IPR001680 GO:0005515
Lja1g5002 835 SMART WD40_4 538 575 IPR001680 GO:0005515
Lja1g5002 835 Gene3D - 627 835 IPR015943 GO:0005515
Lja1g5002 835 SUPERFAMILY WD40 repeat-like 540 833 IPR036322 GO:0005515
Lja1g5002 835 SUPERFAMILY Protein kinase-like (PK-like) 196 467 IPR011009 -
Lja1g5002 835 SUPERFAMILY RING/U-box 2 57 - -
Lja1g5002 835 MobiDBLite consensus disorder prediction 504 527 - -
Lja1g5002 835 Pfam RING-type zinc-finger 6 48 IPR027370 -
Lja1g5002 835 PANTHER - 2 834 IPR044715 -
Lja1g5002 835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Lja1g5002 835 Pfam WD domain, G-beta repeat 672 706 IPR001680 GO:0005515
Lja1g5002 835 Pfam WD domain, G-beta repeat 541 575 IPR001680 GO:0005515
Lja1g5002 835 MobiDBLite consensus disorder prediction 313 332 - -
Lja1g5002 835 MobiDBLite consensus disorder prediction 304 332 - -
Lja1g5002 835 CDD RING-HC_TRIM32_C-VII 5 51 - -
Lja1g5002 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 676 715 IPR001680 GO:0005515
Lja1g5002 835 Coils Coil 309 337 - -
Lja1g5002 835 PRINTS G protein beta WD-40 repeat signature 693 707 IPR020472 -
Lja1g5002 835 PRINTS G protein beta WD-40 repeat signature 562 576 IPR020472 -
Lja1g5002 835 PRINTS G protein beta WD-40 repeat signature 653 667 IPR020472 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5002 540 757 Acyl Lipid Metabolism Gene Families AT3G18860 29.915 6.81e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5002 - K03070 lja:Lj1g3v0874380.1 1689.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5002 1 70226212 70230611 Lja1g5002 1 70226212 70230611 ECH