Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5001 ATGCTAAGCTGCACCAACCACCCTTCCTTCATGGCAGCGCTCTCATTCCCACCACCCTTCTTCGCCGTTCAGACAACCGCTTCGACTTCAACTTCAAGCTCAACTCACGCCAACTCCTTCTTCATTCGACCCTCTCATCCCCTTCCTCCCTGGCCTCGCTTGCGACGCCGCCGTCGCGCTCCCTTATTCGTCGCCGCCGCTTCCGTGAAGGAAAATCTCGGTCGCGCTCGAAAGACTCTCACTGACTTCACAATCTTGAACTACTGGGTCGTTCGTGACTACTACCGCCTTGTTAGCTCCGTCAACGCCTTCGAGCCGCGGATTCAGTTGCTGTCGGATGAAGAGCTGGCCGCTAAAACCCCGGAGTTTCGCCGCCGGCTCGAGCGAGGGGAGACCCTTGCGGATATCCAAGCTGAGGCGTTTGCTGTTGTTCGTGAAGCTGCGAGAAGAAAGCTTGGAATGCGCCATTTTGATGTTCAGATTATTGGGGGAGCTGTGCTGCATGATGGGTCCATTGCTGAGATGAAAACAGGGGAGGGAAAAACCTTGGTTTCCACACTGGCAGCATATCTTAATGCCCTGACCGCTGAGGGTGTACATATTGTAACTGTCAATGATTATTTAGCTCAACGGGATGCTGAATGGATGGGGCGTGTTCACCGTTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAGGGGGATGAATGCTGAAGAACGGAGGCGCAACTATAGATGCGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGCGAGATAATCTTGCTGGAAATCGTGAACAGCTTGTGATGAGATGGCCAAAGCCGTTTCATTTTGCAATTGTTGATGAGGTGGATTCTGTCCTGATAGATGAGGGAAGAAATCCTCTGTTAATCAGTGGTGAGGCTAATCAAGATGCTGCACGATATCCTGTTGCTGCAAAAGTGGCTGAACTGCTTATACAGGAGACTCATTACAAAGTGGAGCTTAAGGATAATTCAGTGGAGCTGACTGAGGAAGGAATCACTCTTGCTGAAATGGCTCTTGAAACTAGTGACCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTGATGAATGCTTTAAAAGCTAAGGAATTCTATCGCCGAGATGTGCAATACATTGTCAGAGATGGAAAGGCTTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCCGAGGGAATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTGGCACAGATCACATACCAGTCATTGTTCAAGCTCTATCCTAAATTGTCAGGAATGACCGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTGAAAATGTTCCAGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGGAAAGATTTGCCTATTCAAGCATTTGCTACTCTTCGTGGGAAATGGGAGCAAGTTCGTCAAGAAGTTGAATATATGTTCAGACAAGGTCGTCCTGTCTTAGTTGGGACAACTAGTGTAGAAAATTCTGAACTTTTGGCTGGTTTGCTTAGGGAATGGAATATTCCCTATAATGTTCTGAATGCTCGACCGAAGTATGCTGCAAGAGAAGCTGAAATTGTTGCACAGGCAGGGCGGAAACATGCCATTACCCTTTCTACTAATATGGCAGGCAGGGGAACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCATACTTCCATTTTTGACGCGAGAGGATCCAAATCTTGAACTTGCTGGTGAGGCTATTTCAGAAAAGGTTCTTCCAAAGATTAAAGTTGGACCATCATCATTAGCCTTACTCGCTAAGACAGCCTTAATGGCGAAATATGTATCCAAAAGTGAGGGTAAAAGCTGGACATATCAGAAGGCTAAATCTTTTATCTCGGATGCTGTTGAAACGAGTCTTTCATTTAGTTTGAAAGAGCTGGAGGAGCTTGCTAATGAAGAATCTGAGGTTTACCCTCTTGGTCCAACAGTAGCACTTGCCTATCTCTCAGTTTTGAAGGATTGTGAAGAACATTGTTTACGGGAAGGATCTGAGGTAAAAAGGCTTGGCGGCCTTCATGTGATTGGTACATCTTTACACGAGTCCCGGAGAATAGACAACCAGCTTCGGGGCAGAGCAGGAAGGCAGGGCGATCCAGGCTCAACACGATTTATGGTCAGCTTGCAGGATGAGATGTTCCGAAAGTTCAATTTTGATACTGAATGGGCTGTGAGACTTATCTCAAAGATCACTAATGATGAGGATCTGCCAATAGAGGGTGATGCCATTGTAAAACAGCTCTTAGCATTGCAAATCAACGCAGAGAAGTTCTTTTTCGGTATAAGAAAGAACCTTGTTGAGTTTGATGAAGTATTGGAGGTGCAACGGAAGCATGTTTATGATCTAAGGCAGTTAATCTTAACCGGAGATGATGAAAGCTGTTCTCAACACATATTTCAGTACATGCAAGCAGTTGTGGATGAGATTGTCTTCAGTAATACTGATCCGTTGAAGCATCCACGTAGCTGGGGTTTGAATAATCTCTCGAGAGAGTTTATGACAATTGGTGGCAAGCTGTTGCATGAATCATTTGGAGTGATTAGTGATGACACTTTACTAAATTCACTTGGGCAACTGAGTGAAGTGAGTTCAGTTGATATTGTCAACTTCTCCCTTCCAAATTTGCCAGCACCTCCAAATGCTTTCAGGGGTATTCGCAGGAAGAGCTCTTCATTGAGACGATGGCTTGCTATTTGCACTGATGATTTAATTGAGAATGGGAAGTATCAAACAACTTCTAATCTCCTTCGCAAGTATCTTGGAGATTTTCTAATAGCTTCCTATTTAAATGTTGTTGAAGAGTCTGGTTATGATGAGAGATATGTAAAGGAAATTGAGAGAGCTGTTCTTTTGAAAACTTTGGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGCTCTGCGGTTAATGTTAGGAGCTTCGGCCATAGAAATCCTCTGGAAGAGTATAAAATTGATGGTTGTCGGTTTTTCATCTCAATGCTCAGTGCAACTCGAAGGTTAACTGTGGAAGCACTCTTGCGACACTGGACATCTCCGATTGAATCCCAAGAACTATTTTTATAA 3198 0.4425 MLSCTNHPSFMAALSFPPPFFAVQTTASTSTSSSTHANSFFIRPSHPLPPWPRLRRRRRAPLFVAAASVKENLGRARKTLTDFTILNYWVVRDYYRLVSSVNAFEPRIQLLSDEELAAKTPEFRRRLERGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTAEGVHIVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNAEERRRNYRCDITYTNNSELGFDYLRDNLAGNREQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANQDAARYPVAAKVAELLIQETHYKVELKDNSVELTEEGITLAEMALETSDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATLRGKWEQVRQEVEYMFRQGRPVLVGTTSVENSELLAGLLREWNIPYNVLNARPKYAAREAEIVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSILPFLTREDPNLELAGEAISEKVLPKIKVGPSSLALLAKTALMAKYVSKSEGKSWTYQKAKSFISDAVETSLSFSLKELEELANEESEVYPLGPTVALAYLSVLKDCEEHCLREGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFRKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVFSNTDPLKHPRSWGLNNLSREFMTIGGKLLHESFGVISDDTLLNSLGQLSEVSSVDIVNFSLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDLIENGKYQTTSNLLRKYLGDFLIASYLNVVEESGYDERYVKEIERAVLLKTLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRHWTSPIESQELFL* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5001 1065 PRINTS SecA protein signature 136 160 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lja1g5001 1065 PRINTS SecA protein signature 174 188 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lja1g5001 1065 PRINTS SecA protein signature 396 418 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lja1g5001 1065 PRINTS SecA protein signature 190 200 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lja1g5001 1065 PRINTS SecA protein signature 243 263 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lja1g5001 1065 PRINTS SecA protein signature 470 483 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lja1g5001 1065 PRINTS SecA protein signature 433 450 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lja1g5001 1065 ProSiteProfiles SecA family profile. 76 780 IPR014018 -
Lja1g5001 1065 Pfam SecA DEAD-like domain 91 458 IPR011115 GO:0005524|GO:0016020|GO:0017038
Lja1g5001 1065 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 71 1064 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lja1g5001 1065 Pfam SecA Wing and Scaffold domain 778 1052 IPR011116 GO:0016020|GO:0017038
Lja1g5001 1065 Gene3D - 474 780 IPR027417 -
Lja1g5001 1065 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 71 1064 - -
Lja1g5001 1065 SMART SecA_PP_bind_2 304 415 IPR011130 GO:0016020|GO:0017038
Lja1g5001 1065 Pfam SecA preprotein cross-linking domain 311 415 IPR011130 GO:0016020|GO:0017038
Lja1g5001 1065 Gene3D Helical scaffold and wing domains of SecA 783 892 - -
Lja1g5001 1065 Gene3D Helical scaffold and wing domains of SecA 921 1056 - -
Lja1g5001 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 472 IPR027417 -
Lja1g5001 1065 SUPERFAMILY Helical scaffold and wing domains of SecA 784 1062 IPR036266 -
Lja1g5001 1065 SMART SecA_DEAD_2 83 459 IPR011115 GO:0005524|GO:0016020|GO:0017038
Lja1g5001 1065 TIGRFAM secA: preprotein translocase, SecA subunit 101 872 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lja1g5001 1065 Gene3D - 95 472 IPR027417 -
Lja1g5001 1065 CDD SF2_C_secA 477 748 IPR044722 -
Lja1g5001 1065 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 323 IPR014001 -
Lja1g5001 1065 Hamap Protein translocase subunit SecA [secA]. 68 1056 IPR000185 GO:0005524|GO:0006605|GO:0006886
Lja1g5001 1065 CDD DEXDc_SecA 115 471 - -
Lja1g5001 1065 Gene3D - 305 425 - -
Lja1g5001 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 761 IPR027417 -
Lja1g5001 1065 SUPERFAMILY Pre-protein crosslinking domain of SecA 303 424 IPR036670 GO:0016020|GO:0017038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5001 Lja-Chr1 70159096 70180715 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5001 K03070 - gmx:100793437 1809.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5001 1 70159096 70180715 Lja1g5001 1 70159096 70180715 ECH