Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4999 ATGGCAATCCCAGTGATTGATTTCTCAAAGCTCAATGGGGAAGAAAGAGCCAAAACTATGGCACAGATTCATAATGGATGTGAAGAATGGGGATTCTTCCAGTTGATCAACCATGGCATTCCAGAGGAACTCCTTGAGAGGGTGAAGAAGGTTTGCTCTGAGTTCTATAAGCTGGAAAGAGAGGAAAATTTCAAGAATTCGAAGACAGTGAAGCTGCTAAACGAATTAGCTGAAAAGAAGAGCAGTGAAAAAGTGGAGCATGCGGACTGGGAGGATGTTATCACTCTCCTGGATGATAACGAATGGCCAGAAAATACACCAGATTTCAGGGAAACCATGGCAGAATATCGGTCTGAGTTAAAGAAACTAGCACAGAGGATCATGGAAGTGATGGATGAGAATCTGGGCTTACCTAAAGGATTCATCAAGAAAGCATTCAATGGTGGAGATGGAGACAATGCATTCTTTGGCACAAAGGTCAGCCACTACCCACCCTGCCCCTACCCAGAGCTCGTGAATGGTCTGCGAGCTCACACTGATGCAGGAGGCGTCATCTTGCTGTTCCAAGATGATAAGGTGGGTGGCCTTCAGATGCTCAAAGGTGGAGAATGGATTGATGTCCAACCTTTGCCAAATGCCATTGTCATCAACACTGGTGACCAGATTGAGGTTCTGAGCAATGGCAGGTACAAGAGTTGTTGGCACAGGGTTCTGGGGTCTCCCAGTGGGAACAGGAGATCAGTGGCATCCTTCTATAACCCATCACTCAAGGCCACGATAAGTCCTGCACCACAATTGGTGGTGGAGAAAGAAAACCAAGAAGTGGAAGACACTTATCCTGAGTTTGTTTTTGGTGACTACATGTCTGTCTATGCTGAGCAGAAGTTCCTCCCCAAGGAACCAAGGTTTCAAGCTGTTCGGGCCAAGTGA 930 0.4656 MAIPVIDFSKLNGEERAKTMAQIHNGCEEWGFFQLINHGIPEELLERVKKVCSEFYKLEREENFKNSKTVKLLNELAEKKSSEKVEHADWEDVITLLDDNEWPENTPDFRETMAEYRSELKKLAQRIMEVMDENLGLPKGFIKKAFNGGDGDNAFFGTKVSHYPPCPYPELVNGLRAHTDAGGVILLFQDDKVGGLQMLKGGEWIDVQPLPNAIVINTGDQIEVLSNGRYKSCWHRVLGSPSGNRRSVASFYNPSLKATISPAPQLVVEKENQEVEDTYPEFVFGDYMSVYAEQKFLPKEPRFQAVRAK* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4999 309 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 5-LIKE 2 307 - -
Lja1g4999 309 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 2 307 - -
Lja1g4999 309 Pfam 2OG-Fe(II) oxygenase superfamily 161 254 IPR044861 -
Lja1g4999 309 Pfam non-haem dioxygenase in morphine synthesis N-terminal 3 107 IPR026992 -
Lja1g4999 309 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 154 254 IPR005123 -
Lja1g4999 309 Coils Coil 113 133 - -
Lja1g4999 309 SUPERFAMILY Clavaminate synthase-like 1 302 - -
Lja1g4999 309 Gene3D - 2 309 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4999 Lja-Chr1 70114082 70115835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4999 1 278 Glycosyltransferase AT5G59530 32.759 3.30e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4999 K05933 - gmx:100796909 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4999 1 70114082 70115835 Lja1g4999 1 70114082 70115835 ECH