Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4976 ATGGAATACTTGGAGAAAATAAGAGAGGCGCAAAGAGCTCGTGGCCCTGCCACCATACTAGCCATTGGCACTGCAACTCCATCCAACTGTATTTACCAAGCTGACTTTGCAGATTACTTCTTTCAAGTGACCAAGAGCGACCACATGACTCAACTCAAGACCAAGTTGAAGCGTATCTGTGACAATTCGATGATAAGGAAACGTTATATACATCTAACTGAAGAATTCCTCCAAGAACATCCTAACATACTAACTTATAAGGAATCATCCTTGGATGCACGCCAAGACATGTTGGTGGAGGAGGTACCAAAGCTTGGAGAGAAAGCAGCATCTAAAGCCATCAAGGAATGGGGAAGGCCCAAGTCAGAGATCACTCATCTCATATTTTGCTCCACCTCAGGCGTAGACATGCCCGGAGCTGATTATCAACTTGTCAAACTCTTAGGCCTCAAACCATCCACAAAAAGATTCATGTTATACAACCTAGGTTGTTACGGTGGAGGCACAGTGCTTCGTTTAGCCAAAGATCTCGCTGAGAATAACTCGGGTGCTCGTGTGCTTGTGGTTTGTACTGAAATCACAGCCGTTGCATTTCGTGGACCCTCCGAGACACACTTGGACTCGTTAGTGGGACAAGCAATCTTTGGTGATGGTGCTTCAGCTGTGATCGTTGGTTCCAACCCTGACACATGCATTGAACGACCATTGTTTTACCTTGTACTAGCCTGCGAGACAATCTTGCCAAACTCCGAAGGTGCCATTGAAGGACACTTGCGTGAGGTGGGGCTCACGTTCCATCTCAACGAAAACGTTCCCCTGTTGATTGGAGAGAACATAGCGAAAAACATTGAAGAAGCCTTTCGCCCACTTGGAATCACTGATTGGAACTCGTTGTTTTGGATAACTCATCCGGGTGGCCCTGCGATCTTGAGGCAAATTGAAGTAACACTAGGGTTGAATCCAGATAAGCTAAGGGCAACAAAACATGTTTTGAGTGAGTATGGGAACATGTCGAGTGCATCTGTTATTTTCGTGTTGGATGAGATGAGAAAGAGGTCCGCAGAGGAAGGGAAAGCCACTACTGGTGGAGGACTGAAGTGGGGTGTTTTACATGGATTTGGCCCTGGCTTGACCATGGAGACAATAGTTTTACACAGCGCCACCATGGACATAGACAACTAG 1182 0.4636 MEYLEKIREAQRARGPATILAIGTATPSNCIYQADFADYFFQVTKSDHMTQLKTKLKRICDNSMIRKRYIHLTEEFLQEHPNILTYKESSLDARQDMLVEEVPKLGEKAASKAIKEWGRPKSEITHLIFCSTSGVDMPGADYQLVKLLGLKPSTKRFMLYNLGCYGGGTVLRLAKDLAENNSGARVLVVCTEITAVAFRGPSETHLDSLVGQAIFGDGASAVIVGSNPDTCIERPLFYLVLACETILPNSEGAIEGHLREVGLTFHLNENVPLLIGENIAKNIEEAFRPLGITDWNSLFWITHPGGPAILRQIEVTLGLNPDKLRATKHVLSEYGNMSSASVIFVLDEMRKRSAEEGKATTGGGLKWGVLHGFGPGLTMETIVLHSATMDIDN* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4976 393 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Lja1g4976 393 PIRSF PKS_III 3 389 IPR011141 GO:0009058|GO:0016747
Lja1g4976 393 Pfam Chalcone and stilbene synthases, C-terminal domain 239 387 IPR012328 -
Lja1g4976 393 PANTHER CHALCONE SYNTHASE 2 4 389 - -
Lja1g4976 393 CDD CHS_like 16 384 - -
Lja1g4976 393 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Lja1g4976 393 Gene3D - 1 235 IPR016039 GO:0016746
Lja1g4976 393 SUPERFAMILY Thiolase-like 215 386 IPR016039 GO:0016746
Lja1g4976 393 Gene3D - 236 390 IPR016039 GO:0016746
Lja1g4976 393 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 389 IPR011141 GO:0009058|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4976 Lja-Chr1 69654893 69658341 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4976 K00660 - nnu:104591893 602.438