Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4958 ATGGGTGCAGGTGCTAGTGCCGCTTCTGTACTGAACCAAGTCCTCCACCAACCAAACCTGAAACCACAACCCCACGGCGCCGCCGCCACAACCACCACCACCGCCGCCACCAGGTCAGTGATCAGAACAATCCTCGGCTACCTCAAAGTTGGTCGCATCCAAAAAGCCACATCCATTCTCTTCGGCTACCCAGAACCCTTCCCTTACTCTCTCTACGCCCTCTTCTTCCGTCTCTGCTCCTCCCACCGCTTCATCGTTGAGGCCCGCAAGGTTGAATCCCACTTGTTAACCTTCTCCCCCAACCCACCCACCTTCCTCCTCAACCGCGCCATTGAGGCCTTTGCCAAATGCTCCTGCCTCCGCGATGCACGGGACGTGTTCGACGAAATGCCCCACAGAGATGGCGGCACCTGGAACGCCATGATCACCGCTTATTCTCAATCGGGTTTCCCTCGCGAGGCTATTTCGATGTTCATTTGTATGAATAGGTCTGGTTTGTTTGCCAATGAGGTCACCTTTGCCGGTGTTCTTGCCTCTTGTGCTGCTGCTAATGAGCTTCCTCTGTCCACGCAGGTTCATGGGCATGTCACAAAATTTGGTTTTTCTGGGAATGTGATACTTGGGACTTCCCTTGTTGATGTTTATGGCAAATGTGGGGTTATGGATGATGCCCGCAAGATGTTTCATGAGATTCCGCACCCCAATGCTGTCACTTGGAATGTGATCGTGAGGCGGTATCTTGATGCTGGTGATGCAAAGGAAGCTATTTCCATGTTCTCGCGGATGTTCTTGTTTGCTGTTTCGCCGTTGAATTATACCTTCTCTAATGCTCTTGTTGCTTGTTCCCGTGTGTGTGCAATCGTGGAGGGGATGCAGATACATGGAGTTGTTGTGAAATCAGGACTGCAGGAGGATAATGTTGTTTCTAGTTCTCTGTTCAAAATGTATGTCAAATGTGGTAACTCAGAGGATGGTACTCGGGTTTTTAACCAGCTTGGTTCAAAAGATTTGGTGTCTTGGACTTCCATTGTGTCGGGGTATGCAATGAGTGGAGAAACATGGGAGGCAAGAAAACTTTTTGATGAGATGCCTGAACGTAATGTGATCTCGTGGAATGCTATGTTGGATGGATATATCAAATCCTTTGAATGGAGCGAGGCATTAGATTTTGTTTATCTGATGCTTGGCTCAGTCAAAGATGTGGATCATGTCACCCTTACTTTAATGTTAAAGGTGTCAGTTGGCCTTTTGGATCATGAAATGGGGAAACGGATTCATGGCTATGTCTATCGACGTGGTTTTCACTCGAACCTTATGGTCAGCAATGCCCTTCTTGACATGTATGGTAAATGTGGAAACTTGAATAGCGTGAGAGTGTTGTTTAGCCAGATGAGTAATTGGCGTGACAGAGTTTCTTGGAATGCTTTATTGGCTAGCTATGGTAATCATAATTTAAGTGAACAAGCATTGACTATATTTTCAGGGATGCAGTGGGAGACCAAACCAACTAAGTATACATTTGGAACCCTTTTAGAAGCATGTGCAGATACCTTTACTCTTCACCTAGGCAAACAAATTCATGGATTCATCATTAGACATGGATATCAAGTAGATACTATAGTCAGCACTGCATTGGTTTACATGTACTCTAAATGCCGTTGTCTTGAGTATGCTTTTGAGGTTCTGAAGGGGGCAGTTTCTAGGGATGTGATAATTTGGAACACCATAATTTTGGGGTGCTGTCACAATCATAAGGGTAAAGAGGCACTTGCACTTTTTCTGAAAATGGAAGAAGAAGGCGTCAAACCAGACCATGTGACCTTTGAGGGCATTCTGCGTGCTTGTGTTGAAGAAGGCCTTGTTGAGTTTGGCACACAATGCTTCAAGTCAATGAGCAATGAATACTATGTCCCACCTCGGCTGGAGCATTACGACTGCATGATTGAACTCTACGGCCAGAATGGATGCATGGAAGAGCTGGAGAGTTTTATAAAGACAATGACAATAGATCCGACTATTCCAATGTTGAAAAGAGCCCTTGATGCTTGTAAGAAAAATGACTGCCCAAGATTGGGAGAATGGATTACAGACAAAATTAATGAATTTCAATATTAA 2115 0.4553 MGAGASAASVLNQVLHQPNLKPQPHGAAATTTTTAATRSVIRTILGYLKVGRIQKATSILFGYPEPFPYSLYALFFRLCSSHRFIVEARKVESHLLTFSPNPPTFLLNRAIEAFAKCSCLRDARDVFDEMPHRDGGTWNAMITAYSQSGFPREAISMFICMNRSGLFANEVTFAGVLASCAAANELPLSTQVHGHVTKFGFSGNVILGTSLVDVYGKCGVMDDARKMFHEIPHPNAVTWNVIVRRYLDAGDAKEAISMFSRMFLFAVSPLNYTFSNALVACSRVCAIVEGMQIHGVVVKSGLQEDNVVSSSLFKMYVKCGNSEDGTRVFNQLGSKDLVSWTSIVSGYAMSGETWEARKLFDEMPERNVISWNAMLDGYIKSFEWSEALDFVYLMLGSVKDVDHVTLTLMLKVSVGLLDHEMGKRIHGYVYRRGFHSNLMVSNALLDMYGKCGNLNSVRVLFSQMSNWRDRVSWNALLASYGNHNLSEQALTIFSGMQWETKPTKYTFGTLLEACADTFTLHLGKQIHGFIIRHGYQVDTIVSTALVYMYSKCRCLEYAFEVLKGAVSRDVIIWNTIILGCCHNHKGKEALALFLKMEEEGVKPDHVTFEGILRACVEEGLVEFGTQCFKSMSNEYYVPPRLEHYDCMIELYGQNGCMEELESFIKTMTIDPTIPMLKRALDACKKNDCPRLGEWITDKINEFQY* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4958 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Lja1g4958 704 Gene3D Tetratricopeptide repeat domain 67 190 IPR011990 GO:0005515
Lja1g4958 704 Gene3D Tetratricopeptide repeat domain 418 519 IPR011990 GO:0005515
Lja1g4958 704 Pfam PPR repeat 209 231 IPR002885 -
Lja1g4958 704 Pfam PPR repeat 338 368 IPR002885 -
Lja1g4958 704 Pfam PPR repeat 442 465 IPR002885 -
Lja1g4958 704 Pfam PPR repeat 369 395 IPR002885 -
Lja1g4958 704 Pfam PPR repeat 643 667 IPR002885 -
Lja1g4958 704 Pfam PPR repeat 137 166 IPR002885 -
Lja1g4958 704 Pfam PPR repeat 237 262 IPR002885 -
Lja1g4958 704 Pfam PPR repeat 110 132 IPR002885 -
Lja1g4958 704 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 506 577 - -
Lja1g4958 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Lja1g4958 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Lja1g4958 704 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 506 577 - -
Lja1g4958 704 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 490 - -
Lja1g4958 704 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 578 702 - -
Lja1g4958 704 Gene3D Tetratricopeptide repeat domain 191 265 IPR011990 GO:0005515
Lja1g4958 704 Gene3D Tetratricopeptide repeat domain 266 417 IPR011990 GO:0005515
Lja1g4958 704 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Lja1g4958 704 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 578 702 - -
Lja1g4958 704 TIGRFAM PPR: pentatricopeptide repeat domain 237 262 IPR002885 -
Lja1g4958 704 TIGRFAM PPR: pentatricopeptide repeat domain 572 604 IPR002885 -
Lja1g4958 704 TIGRFAM PPR: pentatricopeptide repeat domain 338 368 IPR002885 -
Lja1g4958 704 TIGRFAM PPR: pentatricopeptide repeat domain 369 395 IPR002885 -
Lja1g4958 704 Pfam PPR repeat family 469 515 IPR002885 -
Lja1g4958 704 Pfam PPR repeat family 568 615 IPR002885 -
Lja1g4958 704 Gene3D Tetratricopeptide repeat domain 520 634 IPR011990 GO:0005515
Lja1g4958 704 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4958 Lja-Chr1 69052539 69054877 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4958 22 703 Glycoside Hydrolase AT3G49170 28.407 4.57e-85 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4958 - - gmx:100775626 1099.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4958 1 69052539 69054877 Lja1g4958 1 69052539 69054877 ECH