Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4957 ATGAGTATGGAGTTGCAAGGCATCGGCCGCACGCTTCGCGAAGGGAGACAACTCCACGTCTCCTTCCTCAAAACCGGCATTCTGAACTCCTCCCTCACCACCGCCAACCGCCTACTCCAATTCTACTCCCGCCGCGGATGTCTCGACGACGCCACCCAACTGTTCGACGAAATGCCCCAGACAAACGCCTTCTCCTGGAACACTCTCATCGAAGCCCACCTCCACTCCGGCCACAGAAACGAGTCTCTCCGCTTGTTCCACGCCATGCCCGAGAAGACACACTACTCCTGGAACATGCTGGTTTCCGCGTTCGCCAAGTCCGGTGACCTTCAACTTGCTCATTCCCTCTTTGACTCCATGCCATGTAAGAATGGCCTCGTCTGGAACACTATCATTCATGGCTATTCCAAACGTGGGCATCCTCGGAAAGCGCTTTCGCTATTCAAGACCATGAGTTTAGACCCCTTAGAGATGGTGCATTGTGACGCGGGCGTGTTGGCAACTGTTCTTGGTGCCTGTGCTGACTGTTTTGCTCTTAATTGTGGGAAACAAGTCCATGCCCGTGTCATCGTTGAGGGTATTGAGCTTGAATTTGACAAGGTCTTGTGCAGCTCGCTTGTTAAGTTTTATGGGAAATGTGGTGACTTGGATAGCGCTGCTCGCGTTGCGGGTGTTGTGAAGGAAGTGGATGATTTCTCTTTATCTGCTTTGGTTTCAGGCTATGCAAATGCTGGAAAAATGAGAGAGGCAAGAAGAGTTTTTGATAGCAGGGTTGATCAATGTGCTGTGCTGTGGAATTCTATTATTTCGGGTTATGTGTTCAATGGTGAGGAAATGGAAGCGCTGGCTCTCTTCAAGAGAATGCGTAGGCATGGGGTTTCGGGGGATGTATCAACCGTTGCGAACATTTTGAGTGCTGGGTGTAGCTTGCTTGTTGTTGAACTTGTAAAGCAAATGCATGCTCATGCTTGTAAAATTGGGGTGACTCATGACATTGTGGTTGCTAGTGCTCTGCTTGATGCCTACTCAAAAAGTCAAGGCCCTCATGAAGCTTGCAAGTTTTTTGGTGAGCTCAAAGCCTATGATACGATTTTGCTTAATACGATGATCACTGTGTATTCTAATTGCGGAAGAATTGAAGATGCAAAATGGATTTTTGACACAATGTCTAGTAAAACATTAATTTCATGGAATTCAATCTTAGTGGGCCTCGCTAAGAATGCTTGTCCAAGTGAAGCAATTGATATTTTTTGCAGGATGAATATGCTAGACTTAAAAATGGACAAGTTTAGCTTTGCCAGTGTTATCAGTGCCTGTGCCAGTAAATCATGCCTTGAACTTGGGGAGCAGGTATTTGGTAAAGCTATCACCGTGGGGCTTGAATTTGACCATATCATTTCTACCTCACTTGTTGATTTCTATTGTAAATGTGGTTTTGTTGAGATAGGACGTAAAGTTTTTGATGGAATGATAAAAACTGATGAAGTCTCATGGAATACAATATTGATGGGATATGCTACAAATGGATATGGAAGTGAAGCCCTGACCCTGTTTAGGGAAATGAGGTGTAGTGGTGTGAGGCCTTCTGCCATTACTTTTACTGCAGTCCTTTCAGCCTGTGATCATACTGGTCTAGTTGAAGAAGGAAGAAATTTGTTTGACACTATGAAGCATAACTATAATATAAATCCAGAGATTGAACATTACTCTTGCATGGTTGATCTTTATGCCCGAGCTGGTTGCTTAGGGGAAGCTATAGATCTTATTGAAGAGATGCCTTTTCAGGCTGATGCAAACATGTGGTTTTCAGTATTGAGAGGCTGCATAGCCCATGGAAATAGGACTATTGGCAAGATGGCTGCTGAGAAAATCATTCAGCTTGACCCTGAAAATCCAGGTGCTTATATACAATTATCTAACGTACTTGCGACTTCTGAGGACTGGGAAGGATCAGCACAAGTAAGAGAGCTGATGATAGATAAGAATGTTCAGAAGATTCCTGGTTGCAGTTGGGCAGATTAG 2022 0.4486 MSMELQGIGRTLREGRQLHVSFLKTGILNSSLTTANRLLQFYSRRGCLDDATQLFDEMPQTNAFSWNTLIEAHLHSGHRNESLRLFHAMPEKTHYSWNMLVSAFAKSGDLQLAHSLFDSMPCKNGLVWNTIIHGYSKRGHPRKALSLFKTMSLDPLEMVHCDAGVLATVLGACADCFALNCGKQVHARVIVEGIELEFDKVLCSSLVKFYGKCGDLDSAARVAGVVKEVDDFSLSALVSGYANAGKMREARRVFDSRVDQCAVLWNSIISGYVFNGEEMEALALFKRMRRHGVSGDVSTVANILSAGCSLLVVELVKQMHAHACKIGVTHDIVVASALLDAYSKSQGPHEACKFFGELKAYDTILLNTMITVYSNCGRIEDAKWIFDTMSSKTLISWNSILVGLAKNACPSEAIDIFCRMNMLDLKMDKFSFASVISACASKSCLELGEQVFGKAITVGLEFDHIISTSLVDFYCKCGFVEIGRKVFDGMIKTDEVSWNTILMGYATNGYGSEALTLFREMRCSGVRPSAITFTAVLSACDHTGLVEEGRNLFDTMKHNYNINPEIEHYSCMVDLYARAGCLGEAIDLIEEMPFQADANMWFSVLRGCIAHGNRTIGKMAAEKIIQLDPENPGAYIQLSNVLATSEDWEGSAQVRELMIDKNVQKIPGCSWAD* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4957 673 Gene3D Tetratricopeptide repeat domain 491 672 IPR011990 GO:0005515
Lja1g4957 673 Gene3D Tetratricopeptide repeat domain 93 178 IPR011990 GO:0005515
Lja1g4957 673 Gene3D Tetratricopeptide repeat domain 179 259 IPR011990 GO:0005515
Lja1g4957 673 PANTHER OS03G0849700 PROTEIN 11 673 - -
Lja1g4957 673 Gene3D Tetratricopeptide repeat domain 12 92 IPR011990 GO:0005515
Lja1g4957 673 Gene3D Tetratricopeptide repeat domain 333 472 IPR011990 GO:0005515
Lja1g4957 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Lja1g4957 673 Gene3D Tetratricopeptide repeat domain 260 325 IPR011990 GO:0005515
Lja1g4957 673 Pfam E motif 611 671 IPR046848 -
Lja1g4957 673 Pfam PPR repeat family 262 308 IPR002885 -
Lja1g4957 673 Pfam PPR repeat family 494 540 IPR002885 -
Lja1g4957 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Lja1g4957 673 Pfam PPR repeat 395 421 IPR002885 -
Lja1g4957 673 Pfam PPR repeat 233 255 IPR002885 -
Lja1g4957 673 Pfam PPR repeat 127 151 IPR002885 -
Lja1g4957 673 Pfam PPR repeat 568 592 IPR002885 -
Lja1g4957 673 Pfam PPR repeat 95 123 IPR002885 -
Lja1g4957 673 Pfam PPR repeat 64 92 IPR002885 -
Lja1g4957 673 Pfam PPR repeat 336 359 IPR002885 -
Lja1g4957 673 Pfam PPR repeat 367 392 IPR002885 -
Lja1g4957 673 Pfam PPR repeat 34 59 IPR002885 -
Lja1g4957 673 Pfam PPR repeat 468 492 IPR002885 -
Lja1g4957 673 PANTHER OS07G0578800 PROTEIN-RELATED 11 673 IPR045215 GO:0003723|GO:0009451
Lja1g4957 673 TIGRFAM PPR: pentatricopeptide repeat domain 395 425 IPR002885 -
Lja1g4957 673 TIGRFAM PPR: pentatricopeptide repeat domain 496 529 IPR002885 -
Lja1g4957 673 TIGRFAM PPR: pentatricopeptide repeat domain 569 592 IPR002885 -
Lja1g4957 673 TIGRFAM PPR: pentatricopeptide repeat domain 95 126 IPR002885 -
Lja1g4957 673 TIGRFAM PPR: pentatricopeptide repeat domain 263 296 IPR002885 -
Lja1g4957 673 TIGRFAM PPR: pentatricopeptide repeat domain 127 152 IPR002885 -
Lja1g4957 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 62 96 IPR002885 -
Lja1g4957 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Lja1g4957 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4957 Lja-Chr1 68985630 68987986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4957 9 673 Glycoside Hydrolase AT3G49170 28.973 2.22e-96 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4957 - - gmx:100790756 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4957 1 68985630 68987986 Lja1g4957 1 68985630 68987986 ECH