Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4956 ATGTACACATTTTTGAAGCAAACACAAGGTCCTTACACATCACTTTCTTATTGTTCTACTCTCCTAGACCACTGTTTATCTCAAAAATCCGTTAACTTTGTCAAAATCGTGCATGCCCATTTCCTCAAATTGGGTCTCAACACCTACACCTATTTGGGCAATCGCTGTCTCGATCTTTACTCCGATTTGGGCCACATTAACGATGCCTTGAAGGTGTTTGATGATATTTCTCACAAGAATTCCACTTCCTGGAACATTTGCTTAAAAGGGTTGCTCAAAAGTGGGCAGCTTGGCAATGCCTGCCAACTGTTTGATGGAATGCCTGTTAGAGATGTTGTTAGCTGGAACTCCATGATTTCAGGTTATGCTTCTAATGGGTTTTCTAGTGATGCATTGGAGCTGTTTGTTGAAATGCAAGGTGCTGGTATGAGACCGAGTAGTTTCACTTTCTCCATTCTGACGTCGCTGGTGTCGAGTCCCTGTCATGCTAAGCAGGTTCATGGGAGGATAATCAGAAGTGGGATGGATTTGTCTAATGTAGTTCTTGGAAATTCGTTGATAGCAATGTATGGGAAGGTTGGTCTTGTTGATTATTCTTTTAGTGTGATTTTGACCATGAAGAAGATCGATATTATATCTTGGAACTCTTTGATGTGGGCCTGTCATAGAGCCGGGCACCATGAGCTGGCTCTAGCGCATTTCTATAAGATGCGGGATGCGGAGTTGTTACCTGACCAGTTTACGTGTTCGACTTTGATGAGTGTCTGTTCTAACTTGCGAGATTTGGACAAGGGTAAGCAAGTTTTTGCCTTCTGTTTCAAGGTGGGATTTGTTTATAATAGCATTGTATCAAGTGCTGCTATTGACCTCTTTTCCAAATGCAACAGATTGGAGGATTCTGTTCGGCTATTTACAGAACAGGATCGATGGGATACAGCTCTGTGCACTTCCATGATTTCAAGCTATGCTACACATGATTTAGGGGAAGATGCCCTGCATCTTTTTGTTTTAACCTTGAGGGAGAATATTCGGCCAACGGAATACATGGTTAGCTGTCTTCTGAGTTCTTTTTCCATATTTTTACCAGTAGAAGTGGGTATCCAAATCCATGCTTTGGTTCCGAAATTGGGTTTCGAGTCAGATGCAGTTCTTGCGAGTACACTTGTTCATATGTATGCTAAATTTGGAATTATTGATGACGCCCTGCATATCTTCAATGAAACGAAAATAAAAGATTTGGTATCATGGAACACTATAATGATGGGATTGGCTTACAATGGCAAAGTCTCTGTGACCCTGGATCTCTTCAAGGAATTGATTAGAGAAGGTATGGCACCAGATAGAATAACACTTGCTGCAGTCCTACTAGCATGCAACTATGGGAGTTTTGTTGATGAAGGAATAAAAATATTTTTCTCAATGGAGACAGAATTTGGAGTAAAACCAGGGGAAGAACATTATACATATGTTGTGGAGATGTTGAGTAAAGCTGGTATGCTAAAAGAAGCCATTGACATTGTAGAAACAATGCCATATACAATTACCCTTGACATGTGGAGGTTAATTCTTTCTGTTTGTGTAATTCATGGAGACTTGCAAGTTATTGAAACAGTTGCAAAGGAAATAATGGAGAGGGAACCTCAGGCACCCTTTCCTTACTTGGTGTTGGCTCAGGCATATCAGATGATGGGAAGATGGGAGAGCTTGGTTCGAGTGAGGAAGGATATGGAACAAAAATGTACTAAAGAGTTCATTGGATGCAGTTGGTTTGGAATGAAAAACCATGTGTACACTTTTCAGTCAAATCAGTTACAGCATTATGGTGGCAAGGATCTTTATCTGCTGTTGAATTTACTGGTATGGGAGATGGAGACTGAAGGTTATGTCTAA 1890 0.4074 MYTFLKQTQGPYTSLSYCSTLLDHCLSQKSVNFVKIVHAHFLKLGLNTYTYLGNRCLDLYSDLGHINDALKVFDDISHKNSTSWNICLKGLLKSGQLGNACQLFDGMPVRDVVSWNSMISGYASNGFSSDALELFVEMQGAGMRPSSFTFSILTSLVSSPCHAKQVHGRIIRSGMDLSNVVLGNSLIAMYGKVGLVDYSFSVILTMKKIDIISWNSLMWACHRAGHHELALAHFYKMRDAELLPDQFTCSTLMSVCSNLRDLDKGKQVFAFCFKVGFVYNSIVSSAAIDLFSKCNRLEDSVRLFTEQDRWDTALCTSMISSYATHDLGEDALHLFVLTLRENIRPTEYMVSCLLSSFSIFLPVEVGIQIHALVPKLGFESDAVLASTLVHMYAKFGIIDDALHIFNETKIKDLVSWNTIMMGLAYNGKVSVTLDLFKELIREGMAPDRITLAAVLLACNYGSFVDEGIKIFFSMETEFGVKPGEEHYTYVVEMLSKAGMLKEAIDIVETMPYTITLDMWRLILSVCVIHGDLQVIETVAKEIMEREPQAPFPYLVLAQAYQMMGRWESLVRVRKDMEQKCTKEFIGCSWFGMKNHVYTFQSNQLQHYGGKDLYLLLNLLVWEMETEGYV* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4956 629 Pfam Pentatricopeptide repeat domain 208 257 IPR002885 -
Lja1g4956 629 Gene3D Tetratricopeptide repeat domain 462 606 IPR011990 GO:0005515
Lja1g4956 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Lja1g4956 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Lja1g4956 629 PANTHER OS07G0578800 PROTEIN-RELATED 1 629 IPR045215 GO:0003723|GO:0009451
Lja1g4956 629 Pfam PPR repeat 414 443 IPR002885 -
Lja1g4956 629 Pfam PPR repeat 315 336 IPR002885 -
Lja1g4956 629 Pfam PPR repeat 486 510 IPR002885 -
Lja1g4956 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Lja1g4956 629 Pfam PPR repeat family 110 153 IPR002885 -
Lja1g4956 629 PANTHER OS03G0435200 PROTEIN 1 629 - -
Lja1g4956 629 Gene3D Tetratricopeptide repeat domain 264 360 IPR011990 GO:0005515
Lja1g4956 629 Gene3D Tetratricopeptide repeat domain 363 461 IPR011990 GO:0005515
Lja1g4956 629 Gene3D Tetratricopeptide repeat domain 163 263 IPR011990 GO:0005515
Lja1g4956 629 Gene3D Tetratricopeptide repeat domain 26 162 IPR011990 GO:0005515
Lja1g4956 629 TIGRFAM PPR: pentatricopeptide repeat domain 83 112 IPR002885 -
Lja1g4956 629 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Lja1g4956 629 TIGRFAM PPR: pentatricopeptide repeat domain 414 447 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4956 Lja-Chr1 68981012 68983298 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4956 99 629 Glycoside Hydrolase AT3G49170 30.258 1.10e-79 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4956 - - gmx:100819993 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4956 1 68981012 68983298 Lja1g4956 1 68981012 68983298 ECH