Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4955 ATGGCGATGATTGCATCCAGGTTATTGGGAAAAGCCAGAAACTTGGTTCATCACAAAAATCTCTCCTTTTTGTTAGGATCAGTTGTTATCAACAACACTTATTCTTCTTCTTATTCCTCATTTCCTTCTGCTGTTAAGAGATCACCACATGCATCACAGCCGGGTAACATTAGCAACAACTCAGCCACTATTTCTTACTTCTCTCACTATGAATCAACCAAAGCTGAGGCGCAGTTGGAATTGCAGGAAGATGATCATGATCAGGTCATTGATTTTCCTGGAGGGAAAGTTGCTTTTACTTCTGAAATGAGATTCATTTCTGAGTCTTCTGGGAAGAGGGTTCCTTGTTATCGAGTTCTTGACGACAATGGAGAGCCCATGAATCACAGCAACTATGTACAGGTTAGCAAAGAAATGGCAGTGAAGATGTATTCTGAGATGGTAACTCTTCAAACAATGGACAGCATATTCTATGAAGTGCAGAGGCAAGGTAGAATCTCCTTCTACCTTACCTCAATGGGAGAAGAAGCAGTTAACATTGCATCTGCAGCTGCTCTTTCATCAGATGATATTGTATTGCCTCAGTACCGGGAGCCTGGAGTTCTATTGTGGCGTGGTTTCACACTGCAACAATTTGCCAACCAGTGCTTTGGAAACACTAGCGATTTAGGAAAAGGCAGGCAGATGCCTATTCATTACGGGTCTAACGAGCTTAATTACTTCACTATATCATCCCCCATTGCAACACAACTTCCTCAAGCTGTGGGGGCTGCTTATTCTCTTAAAATGGATGGGAAAAGTGCATGTGCTGTCACTTTTTGTGGAGATGGAGGTACTAGTGAGGGAGATTTCCATGCTGGTATGAATTTCGCTGCGGTTATGGAGGCCCCTGTTATTTTTATCTGTCGTAACAACGGATGGGCCATCAGTACCCCTACTGAAGAACAATTTCGAAGTGATGGTATTGTGGTTAAAGGCCAAGCTTATGGTATCTGGAGTATCAGAGTAGATGGAAATGATGCTCTTGCTGTTTATAGTGCAGTTCATACTGCTCGTGAAATCGCTATAAGAGAACAAAGACCAGTTCTAATTGAGGCTCTCACTTATAGAGTAGGACACCACTCTACATCTGATGATTCAACTAAGTACAGGCCAGTTGATGAGATTGAATATTGGAAGATGGCAAGAAACCCTGTAAATAGATTCAAAAGATGGGTGGAAATGAATGGCTGGTGGAGTGACAAGGATGAATTAGAGCTTAGGAGCAGTGTCAGGAAGCAGTTAATGAATGCGATTCAGGTGGCAGAGAAAGCACAAAAACCTCCACTTGAGGACTTGTTTCATGATGTTTATGATCAAGTGCCATCAAACCTTCAGGAGCAAGAAAATCTACTTAGAGAAACCATCAAGAAGAACCCGAAAGATTACCCTTCAGATGTTCCTTTGTAG 1449 0.4217 MAMIASRLLGKARNLVHHKNLSFLLGSVVINNTYSSSYSSFPSAVKRSPHASQPGNISNNSATISYFSHYESTKAEAQLELQEDDHDQVIDFPGGKVAFTSEMRFISESSGKRVPCYRVLDDNGEPMNHSNYVQVSKEMAVKMYSEMVTLQTMDSIFYEVQRQGRISFYLTSMGEEAVNIASAAALSSDDIVLPQYREPGVLLWRGFTLQQFANQCFGNTSDLGKGRQMPIHYGSNELNYFTISSPIATQLPQAVGAAYSLKMDGKSACAVTFCGDGGTSEGDFHAGMNFAAVMEAPVIFICRNNGWAISTPTEEQFRSDGIVVKGQAYGIWSIRVDGNDALAVYSAVHTAREIAIREQRPVLIEALTYRVGHHSTSDDSTKYRPVDEIEYWKMARNPVNRFKRWVEMNGWWSDKDELELRSSVRKQLMNAIQVAEKAQKPPLEDLFHDVYDQVPSNLQEQENLLRETIKKNPKDYPSDVPL* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4955 482 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 113 477 IPR029061 -
Lja1g4955 482 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 35 482 - -
Lja1g4955 482 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 1, MITOCHONDRIAL-LIKE 35 482 - -
Lja1g4955 482 CDD TPP_E1_PDC_ADC_BCADC 143 435 - -
Lja1g4955 482 Pfam Dehydrogenase E1 component 146 442 IPR001017 GO:0016624
Lja1g4955 482 Gene3D - 85 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4955 Lja-Chr1 68971113 68979059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4955 85 320 Acyl Lipid Metabolism Gene Families AT5G09300 76.695 1.53e-139 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4955 K00166 - gmx:100796766 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4955 1 68971113 68979059 Lja1g4955 1 68971113 68979059 ECH