Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4936 ATGAATGTCCCTCATTTTGTGTTTGGCATATTTGGGAATGCTTCTGCTCTGTTCCTCTTCTTGGCACCAGTGATCACATTCAAGAGGATTATAACCAACAGATCGACAGAGGAGTTCTCAGGCTTTCCTTATGTGATGACACTGCTCAATTGTCTCCTTTCAGCTTGGTATGGTCTACCTTTTGTGTCTCCAGACAACATCCTAGTATCAACAGTGAATGGAACAGGAGCTGCAATTGAAATTGTTTATGTTTTGATCTTCATCACATTGGCACCCAAGAAGGAAAAGGCTAAAATTTTTTGCCTCTTCACCTTTGTACTCTTGGTTTTCTCTGTTGTTATTTTTGTGTCCCTTTGTGCCTTGCATGGAAATTCTAGGAAGCTCTTCTGTGGCTTCGCCGCTGCCATATTCTCCGCCATCATGTATGGCTCGCCACTCTCAATTATGAGACTAGTGATCAAAACTAAGAGTGTGGAGTTCATGCCCTTCTTCCTATCCCTGTTCGTGTTCCTCTGCGGCACTTCGTGGTTCATCTTCGGTTTGATAGGTCATGACCCTTTTGTTGCTGTACCTAATGGTATTGGTTCTATTTTGGGAACAATGCAATTAATATTGTATTTCATATACCGGGACAAGAAATGTGTTCCAAGGAAGCAGGCCACAACAAAGGAGGAATCCATGGAGACGGGACATGCAAAACCTCATAAAGAGAAGCAATCCAATGCAAATGGAGCTCAAGCATGA 744 0.4274 MNVPHFVFGIFGNASALFLFLAPVITFKRIITNRSTEEFSGFPYVMTLLNCLLSAWYGLPFVSPDNILVSTVNGTGAAIEIVYVLIFITLAPKKEKAKIFCLFTFVLLVFSVVIFVSLCALHGNSRKLFCGFAAAIFSAIMYGSPLSIMRLVIKTKSVEFMPFFLSLFVFLCGTSWFIFGLIGHDPFVAVPNGIGSILGTMQLILYFIYRDKKCVPRKQATTKEESMETGHAKPHKEKQSNANGAQA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4936 247 PANTHER RAG1-ACTIVATING PROTEIN 1 5 245 - -
Lja1g4936 247 MobiDBLite consensus disorder prediction 219 247 - -
Lja1g4936 247 Gene3D - 125 220 - -
Lja1g4936 247 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 5 245 IPR018180 GO:0051119
Lja1g4936 247 Gene3D - 9 104 - -
Lja1g4936 247 MobiDBLite consensus disorder prediction 219 238 - -
Lja1g4936 247 Pfam Sugar efflux transporter for intercellular exchange 131 213 IPR004316 GO:0016021
Lja1g4936 247 Pfam Sugar efflux transporter for intercellular exchange 7 94 IPR004316 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4936 Lja-Chr1 68146497 68151793 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4936 1 190 Miscellaneous Gene Families AT1G21460 77.895 1.47e-103 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4936 K15382 - gmx:100800304 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4936 1 68146497 68151793 Lja1g4936 1 68146497 68151793 ECH