Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4934 ATGGCTCGCGGTGGAAAACACGAGGACGATTACGAGGATGAGTACGAGGAGGAGGACGATGAGCCGGTCGCCGATTACGACGACGATGCGGCGGAGGATGAAGATTACGACGTGCACGGCAAAGGAGGCAGCGGCGGCGGCGGCAGGAAGCGTGGTAGATCTAGCTTCATCGCTGATGACGCCGAGGAGGATGAGGATGAAGAGGAAGAGGATGATGAGGATGAGGATTACCGCGGCGGCGGCGGCGGCGGCCGAGCGAAACGGAAGCGCAACAACAAGGCTTCCGCGTCGGATTTCTTCGATGAAGAGGCCGCGGTTGATTCCGATGAGGAGGAGGAAGAGGAAGAAGGCGAAGACGACTTCATTGTTGACGGTGGACCTGATCTGCAAGAGGAAGAGCATGTTGGAAGGGTGCGAAATACTCGTATGCTGCCACCACACCATGAAGATCATGAAGATCTTGAAGCTATGGCACAAAGAATTCATGAAAGATATGGAAAGCAGCGTATGCCAGAGTATGATGAAGAAACTACAGATGTAGAACAACAAGCTCTTTTGCCATCTGTGAGAGATCCCAAGCTGTGGATGGTCAAATGTTTGATTGGTCGTGAACGAGAAACAGCTGTTTGTCTCATGCAAAAGTACATAGATAAGGGCTCCGAGTTGCAAATTAGATCAGCTATTGCTCTTGATCATTTAAAAAATTATATATATGTGGAAGCAGATAAAGAAGCCCATGTTAGAGAGGCTTGCAAAGGTCTCCGCAATATATATGGCCAAAAAATAACACTTGTTCCTATCAGAGAAATGACTGATGTGTTGTCAGTTGAAAGCAAAGCTATTGATCTTGCGAGAGATACTTGGGTCAGAATGAAGATTGGGACATATAAAGGAGACCTTGCCAAAGTGGTGGATGTTGATAATGTGCGGCAGAGGGTTACTGTGAAACTAATTCCAAGGGTAGACTTACAGGCCCTCGCAGACAAATTGGAAGGTAAGGAAGTTGTGAAAAAGAAGGCATTTATTCCTCCTCCTCGTTTTATGAATGTAGATGAAGCTAGGGAACTACATATCCGTGTGGAGAATAAAAAAGATTCCTATGGGGAACGATATGATGCCATTGGAGGCATGATGTTCAAAGATGGATTTTTATACAAAATAGTATCAATCAAATCAATAAGTGCTCAGAACATCAACCCTACTTTTGATGAACTTGACAAATTTCGGAAACCCGGAGATGGTGGAGATGGTGATGTAGCTAGTCTTTCAACTTTGTTTGCAAACAGAAAGAAAGGACATTTTATGAAAGGTGATGCTGTCATTGTCGTCAAGGGCGATTTAAAGAACTTGAAGGGATGGGTGGAGAAAGTGGATGAAGATAATGTTCATATAAAACCAGAACTTAAGGATCTCCCGAAAACTCTTGCATTTAATGAAAAGGAACTTTGTAAGTATTTTGAACCTGGAAATCATGTTAAAGTTGTATCCGGTGCTCAAGAAGGTGCTACTGGCATGGTAGTAAAGGTGGATCAACACGTGTTAATATTAATATCAGACACGACAAAGGAGCACATCCGTGTTTTCGCAGATGATGTTGTCGAGAGTTCTGAAGTGACCACCGGAATTACAAAAATTGGGGACTATGAACTTCGTGATCTTGTAGAGCTTGATAATTCGAACTTTGGTGTGATAATACGTGTAGAAAGCGAGGCAGTTCAGGTTCTTAAAGGGGTTCCTGACAGACCTGAAGTTGTGCTTGTTAAATTAAGAGAGATCAAGAGGAAAATAGATAGGAAAATGAGTGTGCAGGATAAGCTGAAGAATACAGTATCGTCAAAGGACGTTGTGCGGATTGTTGAGGGTCCCTGTAGAGGCAAACAAGGTCCTGTGGAGCACATATATAGAAGAATCTTGTTTATCTTTGATCGTCATCATCTTGAACATGCTGGCTTTATATGTGCTAAGGCCCAATCATGTGTAGTTGTGGGAGGTTCCCGTTCCAGTGGTGACAGAAATGGTGATGCCTACTCAAAACTCTCGGCCTTCAGAACTCCACCTCCTATTCCAGATTCCCCGAAGAGGTTTCCTCGAGGAGGGCGAGGATTTGATTCTGGAGGGAGGCATAGGGGCGGAAGGGGGGGACATGATGGTTTGTCAGGTACAACAGTCAAAGTACGCCAGGGTCCCTATAAAGGTTATCGTGGGCGTGTTATAGAGGTTAAAGGCGCAATGGTTCGGGTTGAATTAGAATCCCAAATGAAGGTTGTAACAGTTGATCGCAACCATATATCTGACAATGTGGCTGTAACCCCATACCGTGATACAACTCGATATGGGATGGGAAGTGAAACCCCAATGCATCCATCTCGAACTCCCTTACATCCATATATGACCCCTATGAGAGATCCTGGAGCAACACCTATTCATGATGGAATGAGGACGCCAATGCGTGACCGAGCATGGAATCCTTATACACCAATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCGGGCTCTTGGGGAGCCAGTCCACAGTACCAGCCAGGAAGTCCTCCTTCCCGGCCATATGAAGCCCCAACTCCTGGTGCTGGTTGGGCAAGCACTCCTGGTGGCAATTATAGTGAAGCTGGGACTCCAAGGGACAATTCTGCCTACGCCAATGCTCCAAGCCCATATTTACCGTCAACACCTGGTGGACAGCCTATGACACCAAATTCTGCATCTTATCTTCCTGGCACCCCGGGAGGACAGCCTATGACTCCAGGAACTGGTGGTCTGGACATGATGTCCCCAGTTTTAGGTGGGGACAACGAAGGGCCGTGGTTTATACCAGATATATTAGTCAATGTACACAGGGGTGGAGAAGAATCTATTGGAGTTATAAAAGAGATTCTTCAGGATGGCTCTTGCAGGGTAGCACTTGGGCCTAGTGGTAATGGTGAAACATTAACAGTCCTTCCTACTGAAATGGAAGCTGTAGTACCGAGGAAATCGGACAAAATTAAAATTATGGGTGGGGCATTGCGTGGTGCCACCGGCAAGTTGATTGGAGTAGATGGTACTGATGGTATTGTAAAGGTAGACGACACATTGGACGTTAAGATTTTAGACTTGGTTATTTTAGCCAAATTAGCTCAACCTTGA 3150 0.4568 MARGGKHEDDYEDEYEEEDDEPVADYDDDAAEDEDYDVHGKGGSGGGGRKRGRSSFIADDAEEDEDEEEEDDEDEDYRGGGGGGRAKRKRNNKASASDFFDEEAAVDSDEEEEEEEGEDDFIVDGGPDLQEEEHVGRVRNTRMLPPHHEDHEDLEAMAQRIHERYGKQRMPEYDEETTDVEQQALLPSVRDPKLWMVKCLIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIYGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRVDLQALADKLEGKEVVKKKAFIPPPRFMNVDEARELHIRVENKKDSYGERYDAIGGMMFKDGFLYKIVSIKSISAQNINPTFDELDKFRKPGDGGDGDVASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVDEDNVHIKPELKDLPKTLAFNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVDQHVLILISDTTKEHIRVFADDVVESSEVTTGITKIGDYELRDLVELDNSNFGVIIRVESEAVQVLKGVPDRPEVVLVKLREIKRKIDRKMSVQDKLKNTVSSKDVVRIVEGPCRGKQGPVEHIYRRILFIFDRHHLEHAGFICAKAQSCVVVGGSRSSGDRNGDAYSKLSAFRTPPPIPDSPKRFPRGGRGFDSGGRHRGGRGGHDGLSGTTVKVRQGPYKGYRGRVIEVKGAMVRVELESQMKVVTVDRNHISDNVAVTPYRDTTRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDNSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVLGGDNEGPWFIPDILVNVHRGGEESIGVIKEILQDGSCRVALGPSGNGETLTVLPTEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4934 1049 MobiDBLite consensus disorder prediction 11 34 - -
Lja1g4934 1049 Pfam Early transcription elongation factor of RNA pol II, NGN section 193 274 IPR005100 -
Lja1g4934 1049 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 35 1047 - -
Lja1g4934 1049 MobiDBLite consensus disorder prediction 873 892 - -
Lja1g4934 1049 MobiDBLite consensus disorder prediction 59 77 - -
Lja1g4934 1049 PIRSF Spt5 1 82 IPR017071 GO:0006357|GO:0032784
Lja1g4934 1049 PIRSF Spt5 58 1049 IPR017071 GO:0006357|GO:0032784
Lja1g4934 1049 SMART nusgn_4 191 277 IPR006645 GO:0140673
Lja1g4934 1049 SUPERFAMILY Translation proteins SH3-like domain 426 465 IPR008991 -
Lja1g4934 1049 PANTHER SUPPRESSOR OF TY 5 35 1047 IPR039659 GO:0006357|GO:0032784
Lja1g4934 1049 MobiDBLite consensus disorder prediction 667 726 - -
Lja1g4934 1049 CDD KOW_Spt5_5 720 764 IPR041978 -
Lja1g4934 1049 Gene3D - 698 766 IPR014722 -
Lja1g4934 1049 MobiDBLite consensus disorder prediction 803 931 - -
Lja1g4934 1049 Pfam KOW motif 488 513 IPR005824 -
Lja1g4934 1049 CDD KOW_Spt5_2 434 484 IPR041975 -
Lja1g4934 1049 Gene3D - 282 324 IPR014722 -
Lja1g4934 1049 MobiDBLite consensus disorder prediction 901 915 - -
Lja1g4934 1049 SUPERFAMILY Translation proteins SH3-like domain 477 536 IPR008991 -
Lja1g4934 1049 MobiDBLite consensus disorder prediction 1 138 - -
Lja1g4934 1049 SMART kow_9 609 636 IPR005824 -
Lja1g4934 1049 SMART kow_9 433 460 IPR005824 -
Lja1g4934 1049 SMART kow_9 485 512 IPR005824 -
Lja1g4934 1049 SMART kow_9 996 1023 IPR005824 -
Lja1g4934 1049 SMART kow_9 282 309 IPR005824 -
Lja1g4934 1049 SMART kow_9 716 743 IPR005824 -
Lja1g4934 1049 Gene3D - 488 537 IPR014722 -
Lja1g4934 1049 Gene3D - 173 275 IPR036735 GO:0006355
Lja1g4934 1049 CDD NGN_Euk 193 275 IPR039385 -
Lja1g4934 1049 CDD KOW_Spt5_4 613 655 IPR041977 -
Lja1g4934 1049 ProSitePatterns Ribosomal protein L24 signature. 437 454 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lja1g4934 1049 Pfam Spt5 transcription elongation factor, acidic N-terminal 99 187 IPR022581 -
Lja1g4934 1049 MobiDBLite consensus disorder prediction 696 714 - -
Lja1g4934 1049 CDD KOW_Spt5_6 991 1047 IPR041980 -
Lja1g4934 1049 CDD KOW_Spt5_1 286 323 IPR041973 -
Lja1g4934 1049 Gene3D - 428 485 IPR014722 -
Lja1g4934 1049 MobiDBLite consensus disorder prediction 102 126 - -
Lja1g4934 1049 CDD KOW_Spt5_3 485 535 IPR041976 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4934 Lja-Chr1 67986159 67993556 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4934 K15172 - gmx:100784916 1660.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4934 1 67986159 67993556 Lja1g4934 1 67986159 67993556 ECH