Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4907 ATGGCACCAACAGTGCCATTGACTCTTGAGACAGAAAAGCAACCTGTTACATATGTGCATACAGTTTTAGAGACAGGTCGCCTTCTTGCTTCATCCAGAGGGAACTCCCTAGCACCTGAATTTAATCATTCTCCTAAGTCTTCTGCTGCTTATGAATCCATCCCTTCCCATTACCCAAAATCTTTTGACTACAACATTGTCATCACTGACAGGGAGCATTTTCACCGTTTCATCATAGTTTCAGTGGCAATAATATTTGCTATCACAGCAGTGATTTTATTGGTGCACTTTTTACCTCAGAAGAACAAGCATCATGGTTCTTCAATCAATCTCAAACTGGCAGTGAACCAAGCTCTAACCTTTTATGATGCCCAAAAATCTGGGTACTATCCAAGGAACAGTCCAGTGAAATTTCGAGGAGACTCGGGATTACAGGATGGGAATTCAGCTAAGGCTAATCTTACTGGTGGATTTTATGATTCTGGAAACAACATTAAGTTTACCTTCACCACTGCTTATACTATGACCTTGTTGAGTTGGAGTACAATGGAATATCAAGGTAAATATGCTGATATTGGTGAGCTTCACCATGTCAGGGAAATCATAAGATGGGGCAGTGATTACTTGCTCAAGGTGTTCATCCCCCCAGATTCAAAATCCGGATCCAACCTTACAATGTATTCCCAGGTTGGAAGTACCATTAGTAATAACAATGAGCCCAATGATATAAGTTGCTGGCAAAGACCTGAAGACATGAAGTATGAGAGACTTGTTTCAACATGTGATGGCTCTGCTTCAGATTTAGCTGGCGAAATAGTGGCAGCATTATCTGCAGCATCTATGGTATTCAAAGAAGACCAAGATTACTCAAGGAAACTAATCCAAGCAGCAGAGAATTTATATGAGGCAGTTACAAAGGAAGATCCTAAGAAGCAAGGGACCTACACCAATGTTGATGCCTGTGGAAAACAAGCTAGAATGCTTTACAACTCAACTAGTCACAAAGATGAATTGGCCTGGGGAGCAACTTGGTTATTTCTTGCTACTGAAGAGACTGATTATCTTGCAAATGCAACTGCATTATTTTTGTCAGCCAAGGCTGATGAAACAAATTTTAACAAAGAGGTGTTTGATTGGAATAACAAGCTCAATGCTATCGCGGTTTTGCTTACGGGTATTCGATATTTCCAAGATCCTGGATTCCCATATGAAGATGTTTTGAAACTCTCATCAAACTCTACAGACTCACTCATGTGTTCTTATCTACTCAACAAATATTTGAGCAGGACACCTGGTGGATTGATTATCTTGAAACCTGATATGGGGCCATTACTCCAGTATGCTGCAACAGCATCTTTTCTCAGTAAATTGTATAGTGATTACCTGGACCATCTCAAAATGACTAGTGCAAGTTGCAAGAATGATGAATTCTCAGTGAAAATGCTTCGCGACTTTTCTAGTTCTCAGGTTAACTACATACTTGGACAAAATCCTATGAAAATGAGCTATTTAGTGGGCTATGGTGACAGGTATCCAGTCCAAGTTCATCACAGAGGTGCATCAATCCCTTGGGATAACCGGTATAAAAATTGTGATGATGGTAAGAAATGGCGAAACTCGAAAGACCCGAATCCACAAGTTCTTTTGGGAGCCATGGTGGGAGGGCCAGACACAGATGATAAGTTCAGTGATCAAAGGAGCAACCAAAGGTTCACTGAGCCAAACATTGCAAGCAATGCTGGGTTAGTTGCAGCATTGATTGCACTTCAAGATCCTCCTTCTAATTCACAGGACATAAAAAACTCCTTGTGGGGATGGACTTGA 1824 0.4084 MAPTVPLTLETEKQPVTYVHTVLETGRLLASSRGNSLAPEFNHSPKSSAAYESIPSHYPKSFDYNIVITDREHFHRFIIVSVAIIFAITAVILLVHFLPQKNKHHGSSINLKLAVNQALTFYDAQKSGYYPRNSPVKFRGDSGLQDGNSAKANLTGGFYDSGNNIKFTFTTAYTMTLLSWSTMEYQGKYADIGELHHVREIIRWGSDYLLKVFIPPDSKSGSNLTMYSQVGSTISNNNEPNDISCWQRPEDMKYERLVSTCDGSASDLAGEIVAALSAASMVFKEDQDYSRKLIQAAENLYEAVTKEDPKKQGTYTNVDACGKQARMLYNSTSHKDELAWGATWLFLATEETDYLANATALFLSAKADETNFNKEVFDWNNKLNAIAVLLTGIRYFQDPGFPYEDVLKLSSNSTDSLMCSYLLNKYLSRTPGGLIILKPDMGPLLQYAATASFLSKLYSDYLDHLKMTSASCKNDEFSVKMLRDFSSSQVNYILGQNPMKMSYLVGYGDRYPVQVHHRGASIPWDNRYKNCDDGKKWRNSKDPNPQVLLGAMVGGPDTDDKFSDQRSNQRFTEPNIASNAGLVAALIALQDPPSNSQDIKNSLWGWT* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4907 607 SUPERFAMILY Six-hairpin glycosidases 112 598 IPR008928 GO:0005975
Lja1g4907 607 PANTHER ENDOGLUCANASE 32 602 - -
Lja1g4907 607 Pfam Glycosyl hydrolase family 9 114 586 IPR001701 GO:0004553|GO:0005975
Lja1g4907 607 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 492 518 IPR018221 -
Lja1g4907 607 Gene3D - 106 601 IPR012341 GO:0005975
Lja1g4907 607 PANTHER ENDO-1,4-BETA-GLUCANASE 32 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4907 Lja-Chr1 67526566 67529200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4907 60 589 Glycoside Hydrolase AT5G49720 44.630 1.10e-138 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4907 K01179 - gmx:100805472 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4907 1 67526566 67529200 Lja1g4907 1 67526566 67529200 ECH