Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4896 ATGCTTCAGTGTGCACTTCGAAAGTTCAAAATGCAAAGCAAGAAGGGATCGAGCCATAGACTGAGCAACATGGCTCATCGATCCCGCATATCTTCACTTCTCATCTCCATGTTCGCCACTTTCGCCTCCATCTACGTCGCCGGAAGGTTGTGGCAGGACGCACAGCACCGTGTTTATCTCATCAAAGAACTCGATAGAATCACTGGCCAGGGACAATCTGCTATATCAGTGGATGATACATTGAAGATCATAGCCTGCAGGGAACAACATAAGAAGCTTGAATCCCTTGAGATGGAACTTGCTGCAGCTAGGCAGGAGGGTTTTGTTTCAAAGCCCTTGATACAGACTAATGGGACTTACTCTGAGAGAAGGCCCTTGGTAGTGATGGGTATACTAACAAAGTTTGGCCGCCAGAAGAATAGAGATGCAATTCGCAGGGCATGGATGGGAAGTGCTTTGAAGAAAATAGAAGATGGAAAGGGCATTGTTGTGCGATTTGTTATTGGTAGAAGTTCAAATCGCGGGGACAGTCTGGATAAAGAGATTGATCGAGAGAATAGGCTGAATAATGACTTCTTAATTCTTGATGATCATGTGGAAGAAAATGCTGGATACCCAAAGAAGGCTAAATTGTTCTTTGCTCATGCTGCAGACAAATGGGATGCGGAGTTTTATGCTAAAGTCAATGATGATGTTTATGTAAATATTGATGCCTTGGGAGCTACACTAGCAAATCATTTGGACAAACCTCGGCTTTACATTGGATGCATGAAATCAGGCGAAGTTTTTTCTGAGCCGAACCATAAATGGTATGAACCAGAGTGGTGGAAATTTGGTGACAAAAAATCATATTTTCGTCATGCATCAGGAGAGATGTATGTCATATCACGAGCTTTGGCTAAATTCATATCAATAAATAGATCTATTCTTCGTTCCTATGCCCATGATGATGTGAGTGCTGGATCCTGGTTTATTGGGCTTGATGTGAAACATGTTGATGAGGCAAAGTTTTGTTGCTCATCTTGGTCAACAGGAGCAATTTGCGCAGGAGTTTGA 1056 0.428 MLQCALRKFKMQSKKGSSHRLSNMAHRSRISSLLISMFATFASIYVAGRLWQDAQHRVYLIKELDRITGQGQSAISVDDTLKIIACREQHKKLESLEMELAAARQEGFVSKPLIQTNGTYSERRPLVVMGILTKFGRQKNRDAIRRAWMGSALKKIEDGKGIVVRFVIGRSSNRGDSLDKEIDRENRLNNDFLILDDHVEENAGYPKKAKLFFAHAADKWDAEFYAKVNDDVYVNIDALGATLANHLDKPRLYIGCMKSGEVFSEPNHKWYEPEWWKFGDKKSYFRHASGEMYVISRALAKFISINRSILRSYAHDDVSAGSWFIGLDVKHVDEAKFCCSSWSTGAICAGV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4896 351 Pfam Galactosyltransferase 140 333 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lja1g4896 351 PANTHER HYDROXYPROLINE O-GALACTOSYLTRANSFERASE HPGT1 14 345 - -
Lja1g4896 351 Coils Coil 86 106 - -
Lja1g4896 351 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 14 345 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lja1g4896 351 Pfam Domain of unknown function (DUF4094) 28 105 IPR025298 -
Lja1g4896 351 Gene3D - 121 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4896 Lja-Chr1 67237543 67244249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4896 32 351 Glycosyltransferase AT5G53340 72.050 1.79e-178 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4896 K20854 - gmx:100779561 611.298