Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4884 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCTCGGTCTCCATTAGGATTGAATACCAAGTTTTCCAGTCACCATTCCGCACTGAAGAGACATTTAATCGTAGCGTTTAAAGGTGATAAGCCGAATGACTCAGCTTTGGTTGCGAATCGAGAAAAAAATCCCATGGCGATTGAAATGGCCAGGACGCAGAGGAAAAGGATAGGAAAAACTAGTAAAGTACCTAAGAAAGCGAGAGCTGTTACACAGGAAACTTCACCGTCTTCATTGGATGTAGACTACAGTGAAGCTGCTGCCATACTTGAAAATATATACAAACTCAGTCCTGCATCTGATACTGAAGACTGCAAAGATAGAAAAATTAAAAGAGTCTCCCGGAGGGGAAGGAGGGTCGGCGAAGACAGTGAAGAAAAAGAGGTAAAGAATGATAGGGTAGTCAGGAACAAGAATATGAAAGCAAAACGATTGAGTCTTAATGAGAGGATTGCAATGAAAAAGAACGAAAGTGGGGATGTAGATGTAGTCATTCCAACTCGAAAGAAGAGAAATGTTCAAAACAGAGTCGAGAAGATTGATGAACTTGTTAGGGAATATTCAGGGACAACTGATCTAGCCAGTTTGGACTGGAAAAAAATGAGAATACCTGCAGTTCTTCCTTCTTCAGAACATGCTTGGTTGTTCAAATTGATGCAACCTATGAAGGTATTTCTTCAAGTGAAGGATAGTTTACAGAAGGAGCAAGGAAGAGAACCAACAGAGGGGGAAATAGCTGATGCAACAAACATGAATGTCTCTCAAGTCAAGAAAGCGATAGAGGTTGGCCGAGCTGCAAGAAACAAGCTCATAAAGCACAACCTCCGGCTTGTCTTGTTTGTGATCAACAAATATTTTGCGGATTTCGCTAATGGACCAAGGTTTCAAGATCTTTGTCAGGCAGGGGTTAAGGGACTTATTACTGCAATTGATCGTTTTGAGCCAAACCGGAGATTTCGGCTATCTACATACAGTTTGTTTTGGATAAGACATGCTATCATTCGTTCCATGACCCTCTCAAGCTTCACACGTGTTCCCTTTGGACTTGAATCGGTTAGAGCGGAGATCCGGAGAGCTAAAGCCGAGTTAACAGTTGAGCTTCAAAGGCAACCAACGGAGGAAGAAATACTAGAAAAAGTTCAGATATCCCCTGAAAGATACCACGATGTAATGAAGGCTTCAAAGCCCGTTCTTTCGCTGCACTCGAGACATAAAACCACACAAGAAGAGCTTATTAATGGGGTTGTTGATGATGAGGGTGTTAATGGTGATAATCGGAAGCAACCTGCTCTACTAAGGCTTGCTCTAGATGATGTGCTTGATTCCTTGAAGCCCAAAGAGAGCTTGGTGATAAGGCAGAGATTTGGACTTGATGGGAAGGGTGACAGAACGTTGGGAGAAATAGCTGGGAACTTGAATATTTCAAGGGAAATGGTAAGAAAGCACGAAGTCAAGGCTCTCATGAAGCTCAAGCATTCTGCTCGATTGGACTATCTTCGTCGCTATGTTGTATAA 1545 0.4252 MGVVTVSSSAARSPLGLNTKFSSHHSALKRHLIVAFKGDKPNDSALVANREKNPMAIEMARTQRKRIGKTSKVPKKARAVTQETSPSSLDVDYSEAAAILENIYKLSPASDTEDCKDRKIKRVSRRGRRVGEDSEEKEVKNDRVVRNKNMKAKRLSLNERIAMKKNESGDVDVVIPTRKKRNVQNRVEKIDELVREYSGTTDLASLDWKKMRIPAVLPSSEHAWLFKLMQPMKVFLQVKDSLQKEQGREPTEGEIADATNMNVSQVKKAIEVGRAARNKLIKHNLRLVLFVINKYFADFANGPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFTRVPFGLESVRAEIRRAKAELTVELQRQPTEEEILEKVQISPERYHDVMKASKPVLSLHSRHKTTQEELINGVVDDEGVNGDNRKQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHSARLDYLRRYVV* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4884 514 Coils Coil 359 379 - -
Lja1g4884 514 Gene3D - 353 405 IPR036388 -
Lja1g4884 514 Gene3D - 228 269 IPR036388 -
Lja1g4884 514 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 419 507 IPR013324 -
Lja1g4884 514 Coils Coil 147 167 - -
Lja1g4884 514 Gene3D - 437 514 IPR036388 -
Lja1g4884 514 Pfam Sigma-70 region 2 280 346 IPR007627 GO:0003700|GO:0006352|GO:0006355
Lja1g4884 514 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 514 - -
Lja1g4884 514 PRINTS Major sigma-70 factor signature 489 500 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g4884 514 PRINTS Major sigma-70 factor signature 474 489 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g4884 514 PRINTS Major sigma-70 factor signature 331 339 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g4884 514 PRINTS Major sigma-70 factor signature 453 465 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g4884 514 PRINTS Major sigma-70 factor signature 307 320 IPR000943 GO:0003700|GO:0006352|GO:0006355
Lja1g4884 514 Gene3D - 270 348 - -
Lja1g4884 514 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 199 347 IPR013325 GO:0003700|GO:0006352|GO:0006355
Lja1g4884 514 MobiDBLite consensus disorder prediction 64 86 - -
Lja1g4884 514 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 355 422 IPR013324 -
Lja1g4884 514 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 514 - -
Lja1g4884 514 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 276 502 IPR014284 GO:0003700|GO:0006352|GO:0006355
Lja1g4884 514 Pfam Sigma-70 region 3 237 275 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lja1g4884 514 Pfam Sigma-70 region 3 364 432 IPR007624 GO:0003700|GO:0006352|GO:0006355
Lja1g4884 514 Pfam Sigma-70, region 4 449 502 IPR007630 GO:0003700|GO:0006352|GO:0006355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4884 K03093 - gmx:100812580 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4884 1 66854554 66858123 Lja1g4884 1 66854554 66858123 ECH