Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4867 ATGGGGGACGCCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGAGAGTAACAGGAATGGCTTAGAGAAGGAACTTCCTTCATGTTGTTTGAAGGCTATTGCTTCAGACCCTGAGTTGGATGCAAAATGCCATTCCACCGTTGTTTCTGGGTGGTTCTCAGCACCTCAAACTTGCTCTGGGAAATCTGGGAAAGATGCTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGACAAGATCTTGTACAAGGAAAAGTCAGAGTACCAAGAGGTCTTGGTTTTTGAGTCATCAATATATGGGAAAGTTCTTGTACTTGATGGGATTGTTCAGTTGACTGAGAAGGATGAATGCGCTTACCAGGAGATGATAGCTCATCTTCCCCTTTGTTCAATTGCGTCCCCAGAAACTGTTTTAGTTGTTGGTGGCGGAGATGGCGGGGTTCTAAGGGAAGTCTCCCGCCACAGCTCTGTGAAGCGTATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCCAGAGTTAGCTGTTGGATTTGATGATCCTCGAGTACACCTGCATGTTGGCGATGCTGTTGAATTTCTTAGATGTACTCCTGAGGGGAAGTATGATGCTATAATTGTTGATTCCTCAGATCCTGTGGGTCCTGCCCAGGAACTTGTAGAGAAACCATTTTTTGAAACATTAGCGAAAGCATTGAGGCCTGGTGGAGTTCTCTGTAACATGGCAGAAAGTATGTGGCTTCATACACACCTTATCCAAGATATGATCTCCGTCTGTAGAGAAACATTTAAAGGTTCTGTACATTATGCATGGGCAAGTGTTCCTACATATCCGAGTGGTCTGATAGGGTTTCTTCTATGCTCAACGGAGGGGCCACCTGTTGATTTTGTAAACCCCATCAACCCAATTGAAAAGTTGGAAGGTGCAGATAAGCACAAAAGGAAACTTAGATTCTATAACTCAGAGATGCACACAGCTGCTTTCGCGTTGCCTGCATTTCTGAAGAGGGAGGTGAGCTGGATCCGTGATCCTTCCGCTTAG 1086 0.4457 MGDAAGRGLECQKTMDGKESNRNGLEKELPSCCLKAIASDPELDAKCHSTVVSGWFSAPQTCSGKSGKDAYFNNPMWPGEAHSIKVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIASPETVLVVGGGDGGVLREVSRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDAVEFLRCTPEGKYDAIIVDSSDPVGPAQELVEKPFFETLAKALRPGGVLCNMAESMWLHTHLIQDMISVCRETFKGSVHYAWASVPTYPSGLIGFLLCSTEGPPVDFVNPINPIEKLEGADKHKRKLRFYNSEMHTAAFALPAFLKREVSWIRDPSA* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4867 361 Gene3D Spermidine synthase, tetramerisation domain 46 119 IPR037163 -
Lja1g4867 361 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 358 IPR001045 GO:0003824
Lja1g4867 361 PIRSF Spermidine_synth 42 357 IPR030668 GO:0006595
Lja1g4867 361 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 304 IPR030374 -
Lja1g4867 361 PANTHER SPERMINE SYNTHASE 1 358 - -
Lja1g4867 361 Pfam Spermine/spermidine synthase domain 125 310 - -
Lja1g4867 361 Gene3D Vaccinia Virus protein VP39 120 355 IPR029063 -
Lja1g4867 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 71 352 IPR029063 -
Lja1g4867 361 TIGRFAM speE: spermidine synthase 79 348 IPR001045 GO:0003824
Lja1g4867 361 CDD AdoMet_MTases 167 253 - -
Lja1g4867 361 Hamap Polyamine aminopropyltransferase [speE]. 54 354 IPR001045 GO:0003824
Lja1g4867 361 Pfam Spermidine synthase tetramerisation domain 75 122 IPR035246 -
Lja1g4867 361 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 146 159 IPR030373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4867 Lja-Chr1 66482794 66488621 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4867 K00797 - gmx:100815244 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4867 1 66482794 66488621 Lja1g4867 1 66482794 66488621 ECH