Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4838 ATGGGCTGCTATTGTTCAACTTCAAAGAAATATAAAACACCAGGATATGAGGAGCCCACTGTTCTTGCTTCTGAGACACCTTGTGAGTATCCATCATCAAGTGTTTCTGTGAGTGAAGTAGAGGCATTATATGAACTCTATATGAAGGTCAGCAACTCAGTTATTGAAGATGGTCTTATTCACAAGGAAGAATTCCAGCTGGCACTTTTCAGGAATAAAAATGAGAGAAGTCTGTTCGCAGACAGGATTTTTGACTTATTTGATGTCAAGCGCAATGGTGTCATTGAGTTCGGGGAATTTGTTCGATCATTGGGTGTTTTTCATCCAGATGCAGCTTTAGAAGACAAGATTGCATTTGCTTTTCGGTTGTATGATCTGAGACAGACAGGGTATATTGAACGAGAGGAGTTAAAGGAGATGGTATTGGCACTTCTGCACGAATCAGATCTTGTACTTTCAGATGATATGATAGAAATGATTGTGGATAAGACTTTTGATGATGCTGATACAAAAAGTGACGGAAGGATCGATCAAGATGAGTGGAAAGCATTTGTGTCTAAACATCCATCATTGATAAAGAACATGACTCTACCATATCTGAAGGATGTTTCCTTAGCATTTCCAAGTTTTGTGGTAAGAACAGAAGTTGAAGACTCAGAGCTGTGA 666 0.3904 MGCYCSTSKKYKTPGYEEPTVLASETPCEYPSSSVSVSEVEALYELYMKVSNSVIEDGLIHKEEFQLALFRNKNERSLFADRIFDLFDVKRNGVIEFGEFVRSLGVFHPDAALEDKIAFAFRLYDLRQTGYIEREELKEMVLALLHESDLVLSDDMIEMIVDKTFDDADTKSDGRIDQDEWKAFVSKHPSLIKNMTLPYLKDVSLAFPSFVVRTEVEDSEL* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4838 221 Pfam EF-hand domain pair 115 184 IPR002048 GO:0005509
Lja1g4838 221 Gene3D - 31 219 - -
Lja1g4838 221 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 221 - -
Lja1g4838 221 ProSiteProfiles EF-hand calcium-binding domain profile. 156 191 IPR002048 GO:0005509
Lja1g4838 221 SMART efh_1 160 188 IPR002048 GO:0005509
Lja1g4838 221 SMART efh_1 116 144 IPR002048 GO:0005509
Lja1g4838 221 SMART efh_1 79 107 IPR002048 GO:0005509
Lja1g4838 221 SUPERFAMILY EF-hand 34 207 IPR011992 -
Lja1g4838 221 PRINTS Recoverin family signature 130 148 - -
Lja1g4838 221 PRINTS Recoverin family signature 176 196 - -
Lja1g4838 221 PRINTS Recoverin family signature 83 104 - -
Lja1g4838 221 CDD EFh 116 186 IPR002048 GO:0005509
Lja1g4838 221 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Lja1g4838 221 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Lja1g4838 221 PANTHER CALCINEURIN B 1 221 IPR045198 GO:0005509|GO:0019722|GO:0019900
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4838 Lja-Chr1 65917780 65922600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4838 35 221 EF-hand Containing Proteins AT5G24270 75.401 6.35e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4838 K06268 - gmx:100811649 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4838 1 65917780 65922600 Lja1g4838 1 65917780 65922600 ECH