Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4823 ATGGAGTCTCTGCAACTTGGTTCTCCTCTTCTTCTTCGGCATCCTCGTACACCAGCTCAAGCTTATGCCAATTCACGGTTGATGAAAATTGCGCAACTGGGGTTCCCTTCTTTTCTTAAAAGGGCTGCTAAAAATGCCAACCTGCGTGCGTTTCCGGTGGATAATGAAGGTGGGGTTGCTGCTTCACAAGATGACCCTTTTGCTTTTGAAGATGAACAAGTGAAGGCTCTCCCTTTATCTACAGAGATGGATGATTTTGGCTCTATTGTTGGCTTTCACTTGGGCTCTGAGAATGGGAAGATCACGGAAGAAGATTCAACTAGTGATGGAGTTGAAGAGAAAGCTAAGGCTAGAGTTTGCTACAATATTGTTTTTGTTACTTCAGAAGCGGCGCCGTATTCAAAGACCGGTGGCCTTGGAGATGTTTGTGGTTCTTTGCCAATAGCACTGGCAGCTCGGGGTCACCGTGTTATGGTTGTCTCTCCCAGGTACATCCATGGTACTCCTGGGGATAGTAAGTTTTCTGGGGCAATCGATCTTGAACGCCGCATCAATGTACCTTGTTTTGGAGGTGCTCAGGAAGTAGGCTTTTTCCATGAGTGCAGGGAGGGTGTTGATTGGGTATTTGTAGATCACCCCTCATTCCATAGACCAGGGAATCCATATGGGGACAAGAATGGGCCATTTGGGGATAATCAGTTTCGGTTCACTTTACTTTGCTATGCAGCATGTGAAGCCCCATTGGTGCTTCACTTGGGAGGGCTTACTTATGGAGAAAAGTGTTTATTCATTGTTAATGATTGGCATGCCAGCCTAGTACCAGTACTTCTAGCAGCAAAGTATCGTCCACATGGGGTATATAAGGATGCACGTAGTGTATTAGTGATTCATAACATTGCACATCAGGGAGTGGAACCTGCAATTACATATGGTAATTTGGGGCTGCCTCCAGAATGGTATGGAGCACTGGAATGGGTGTTCCCTAATTGGGCAAGGGTGCATGCTCTTGACACGGGTGAAGCTGTCAACTTTTTGAAAGGTGCCGTTGTTACAGCTGACCGGATTGTAACAGTAAGCAAGGGTTATTCGTGGGAGATAACAACTAGTGAAGGTGGATATGGTCTGCATGAACTATTAAGCAGCCGAAAAAGTATTCTCAGTGGGATCACAAATGGAATTGATATTACTGAATGGGACCCATCATCTGACGAACATATTGCATGCAGCTATTCTGCCGATGACCTTTCTGGGAAGGTCAAATGCAAGATTGCATTACAGAAGGAGTTGGGTCTCCCAGTGAGGCCTGATATTCCGTTGATTGGATTCATCGGAAGACTTGACTACCAAAAAGGCATTGACTTGATTCGTGAGGCAATTCCAGAGCTTATGGAGTATGATGTTCAGTTCGTAATGCTTGGTTCTGGTAGCTCTATTTATGAAGACTGGATGAGAGCAGCAGAGTCCTCTTATAGAGATAAATTCAGGGGTTGGGTTGGATTTAATGTTCCAGTATCTCATAGAATAACTGCAGGCTGTGATATACTGTTAATGCCATCCATATTCGAGCCCTGCGGACTAAATCAGTTGTATGCAATGCGATATGGAACAATACCAGTGGTTCATGAAACTGGCGGGCTAAGGGATACTGTTCAAAGTTTTAATCCATTTGCTGAAGGAGGCAATGCTGAAGGCACAGGGTGGACGTTTTCTCCACTATCAAAGGAGAGCATGTTAGTGGGTCTAAGACATGCCATTAAAACATATACTGAATACAAGTCTTGTTGGGAGGGACTGATGAAAAGAGGCATGAACAGAGATTACACATGGGTAAAGGCAGCCACTCAGTACGAGCAAATCATCGAATGGGCGTTCATGGATCCACCCTATTGCTGA 1893 0.4501 MESLQLGSPLLLRHPRTPAQAYANSRLMKIAQLGFPSFLKRAAKNANLRAFPVDNEGGVAASQDDPFAFEDEQVKALPLSTEMDDFGSIVGFHLGSENGKITEEDSTSDGVEEKAKARVCYNIVFVTSEAAPYSKTGGLGDVCGSLPIALAARGHRVMVVSPRYIHGTPGDSKFSGAIDLERRINVPCFGGAQEVGFFHECREGVDWVFVDHPSFHRPGNPYGDKNGPFGDNQFRFTLLCYAACEAPLVLHLGGLTYGEKCLFIVNDWHASLVPVLLAAKYRPHGVYKDARSVLVIHNIAHQGVEPAITYGNLGLPPEWYGALEWVFPNWARVHALDTGEAVNFLKGAVVTADRIVTVSKGYSWEITTSEGGYGLHELLSSRKSILSGITNGIDITEWDPSSDEHIACSYSADDLSGKVKCKIALQKELGLPVRPDIPLIGFIGRLDYQKGIDLIREAIPELMEYDVQFVMLGSGSSIYEDWMRAAESSYRDKFRGWVGFNVPVSHRITAGCDILLMPSIFEPCGLNQLYAMRYGTIPVVHETGGLRDTVQSFNPFAEGGNAEGTGWTFSPLSKESMLVGLRHAIKTYTEYKSCWEGLMKRGMNRDYTWVKAATQYEQIIEWAFMDPPYC* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4823 630 Pfam Glycosyl transferases group 1 438 586 IPR001296 GO:0016757
Lja1g4823 630 Pfam Starch synthase catalytic domain 122 380 IPR013534 -
Lja1g4823 630 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 121 624 - -
Lja1g4823 630 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 103 630 - -
Lja1g4823 630 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 122 620 IPR011835 GO:0004373
Lja1g4823 630 Gene3D Glycogen Phosphorylase B; 395 606 - -
Lja1g4823 630 CDD GT5_Glycogen_synthase_DULL1-like 122 622 - -
Lja1g4823 630 Gene3D Glycogen Phosphorylase B; 141 619 - -
Lja1g4823 630 PANTHER STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 103 630 - -
Lja1g4823 630 Hamap Glycogen synthase [glgA]. 121 623 IPR011835 GO:0004373
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4823 Lja-Chr1 65642514 65656170 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4823 122 620 Glycosyltransferase AT3G01180 51.186 2.64e-166 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4823 K00703 - gmx:100807354 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4823 1 65642514 65656170 Lja1g4823 1 65642514 65656170 ECH