Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4816 ATGGAAGCTTCGCTTCTTCTTCCCTCTCACTCAGTCACTGGATTCAGGGCTAGCAAAGAGCTTCCGCATGTGCTGTCACTGCGTGAGTTGAAAAGCATAATATGCTTCTCAGTTTGTAATCAGAAGCAAAGTTACAATCGAAAGTTTTACATTCTACCCATTAGGACTGTTTCTGGGTTCTGCACTTCAAGATCCTCAGTTAGGTCATTGGAATTCAGTGGGACAGGCCCACATAGTGATGCTCATTCTGGTTTTTCAGCTCCAAATGACAATCAGAGATATAGCAATTTTGAGAAAGAGTTGGAAGAATTATTTGTTGAAGTGAAAAGAATGATTAAAACGGGAAAGAAAAATGATGCTATAGACCTGCTTAATGCAAATTATGAAGTGGTGAAAGAGCAGATGAATGCAGGCACTAAAGGCATAGAAGAAGCTGCAATGTTAGACATCCTAGCATTGGGCTACATGGCTGTTGGAGACTTAAAATTTGTTGGTTCTCTGTTGAATTTGATGAAAGAAGTTGTTGACAACTTAAAGGATGATGCACCACATATAGATTCAATACTTGTGCATATGGGCAGTCTGTTTGTGAAGTTAAGCGAGTTTGAAAAATCATTGAACGCGTATCAAAGGGCTGTGTACATTATGGAGAAGACCTATGGTAAGGATAGCACTATGCTTGTGACACCCCGTTTGGGTATGGCAAAAGCTCTTGGTTCCGTTGGAAAAGCAACAAAAGCAATAGAGATATACCAGCATGTTATTAGTCTCTTGGAATCAAGTAGAGGTGCTGAAAGTAAGGACTTGGTTATACCTTTACTTAGTCTTGGCAACCTTTTACTGAAAGAAGGGAAAGCCAATGACGCAGAAAGCCACTTTACTAGGGTTCTAAACATATACACAAAAGTATATGGACAAAAGGATGGAAGAATAGGAATGGCTATGAGTTCCCTAGCCCAAGTGAAGTGTGCTCTAGGGAAGTCAGATGAAGCAGTTAATTTGTTGAAAGGTGCTCTTAAGGTCATGAAGGAATCAAATTACATGTCACCGGATGACAGTATTATGGAAAAGATGAGGGTAGATCTAGCTGAGTTACTCCATGCTGCTGGGAGAGGACAAGAAGGTAGAGAGGTGTTAGAGGAGTGCTTATTAATCACTGAGAGGTCCAATGGAAAGGATCACCCGAACTTAGCGGTACACATGATAAATCTTGCAACTTCATATTCACGGTCGAAGAATTATGCAGAGGCTGAACACTTGCTGAGAAGAAGTTTGCAGATCATGGTAAAGCATAAGGGAACTGATGACCAATCCATTAGCTTTCCTATGTTGCAACTTGCCGTTACACTATACCATTTGAAAAACGACGAAGAAGCAGAGAAACTTGCCCTGGAGGTTTTGCGCATCCGCGAGAAGGCATTTGGGGATTATTCTCTTCCCGTTGGGGAGGCTTTGGATTGTTTGGTGTCTATTCAAACCAGACTGGGTAAGGATGAAAATGAGTTACTTGATGCTCTTAGAAGGATCTTAAATATCCAAGAGAAGGAATTTGGATATGAAAGTGAAGAGGTTTTGGTTACACTACAAAAAATTGTATACTACTTGGATAAGCTAGGGAGAAAAAATGAAAAGCTACCTTTAGAGAGAAGGTTATCTGTGCTTAGGAAGAAGTTTAAGATGATGGTTCCTCATAGTGGGAAATAA 1704 0.4043 MEASLLLPSHSVTGFRASKELPHVLSLRELKSIICFSVCNQKQSYNRKFYILPIRTVSGFCTSRSSVRSLEFSGTGPHSDAHSGFSAPNDNQRYSNFEKELEELFVEVKRMIKTGKKNDAIDLLNANYEVVKEQMNAGTKGIEEAAMLDILALGYMAVGDLKFVGSLLNLMKEVVDNLKDDAPHIDSILVHMGSLFVKLSEFEKSLNAYQRAVYIMEKTYGKDSTMLVTPRLGMAKALGSVGKATKAIEIYQHVISLLESSRGAESKDLVIPLLSLGNLLLKEGKANDAESHFTRVLNIYTKVYGQKDGRIGMAMSSLAQVKCALGKSDEAVNLLKGALKVMKESNYMSPDDSIMEKMRVDLAELLHAAGRGQEGREVLEECLLITERSNGKDHPNLAVHMINLATSYSRSKNYAEAEHLLRRSLQIMVKHKGTDDQSISFPMLQLAVTLYHLKNDEEAEKLALEVLRIREKAFGDYSLPVGEALDCLVSIQTRLGKDENELLDALRRILNIQEKEFGYESEEVLVTLQKIVYYLDKLGRKNEKLPLERRLSVLRKKFKMMVPHSGK* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4816 567 Gene3D Tetratricopeptide repeat domain 357 565 IPR011990 GO:0005515
Lja1g4816 567 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 101 548 - -
Lja1g4816 567 SUPERFAMILY TPR-like 114 258 IPR011990 GO:0005515
Lja1g4816 567 ProSiteProfiles TPR repeat profile. 186 219 IPR019734 GO:0005515
Lja1g4816 567 SUPERFAMILY TPR-like 234 342 IPR011990 GO:0005515
Lja1g4816 567 Pfam MalT-like TPR region 183 467 IPR041617 -
Lja1g4816 567 SUPERFAMILY TPR-like 360 496 IPR011990 GO:0005515
Lja1g4816 567 Coils Coil 94 114 - -
Lja1g4816 567 SMART tpr_5 440 473 IPR019734 GO:0005515
Lja1g4816 567 SMART tpr_5 186 219 IPR019734 GO:0005515
Lja1g4816 567 SMART tpr_5 312 345 IPR019734 GO:0005515
Lja1g4816 567 SMART tpr_5 228 261 IPR019734 GO:0005515
Lja1g4816 567 SMART tpr_5 398 431 IPR019734 GO:0005515
Lja1g4816 567 SMART tpr_5 270 303 IPR019734 GO:0005515
Lja1g4816 567 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 101 548 - -
Lja1g4816 567 Gene3D Tetratricopeptide repeat domain 109 356 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4816 - - lja:Lj1g3v0985630.1 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4816 1 65545043 65550074 Lja1g4816 1 65545043 65550074 ECH