Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4815 ATGGAGAGGTCTAGATCTAAGAGAAGCTACTACTATGACCAAGACTATGATTCTGAGACCGTAGCGAGGACCAGGCCGAGGTATAACCACCACTACAGTGCCAGCTCCCACCGCCACCGTGGCGGCGGAAGGCATGTTAAGGCGCAGGAGCCGCCGGTGACGGTGACGACGAGCTACCGCATTCTGTGTCACGACTTGAAGGCCGGCGGCGTGATTGGGAAGTCCGGCGGGATTATTAAGTCCATCAGGCAGCGGACCGGCGCGTGGATCAACGTGCATGAGCTGATGCCCGGAGATGAGGAGCGGATCATCGAGATCAGTGACACGCGCCGGCAGGACCCGGATAGGAGGATGCCGTCGTTCTCGCCGGCGCAGGAGGCGTTGCTGATGATACATGAGAGGATCCTGGAGGCTGATGCGGGGGTTGGGGAGGAGGATGAGGAGTATGGAAGGGGTGGTGGTGGTGGTGGCGGTGGTGGGAGTGGCCGTGTTTCGACGAGGTTGGTGGTGTCGAGAATGCATGTAGGGTGTTTGATGGGGAAAGGAGGGAAGATTATTGAACAAATGAGGATGGAGACCAAGACCCAAATTAGAATACTACCAAGAGATCACAATCTACCTCGTTGTGTTTCCATGTCAGAAGAGATTGTTCAGGTTACAGGTGATGTTAATGCTGTAAAGAATGCTCTAGAAGTTATATCATCCCGATTGAGGGAGAGCCAACACCGTGACCGTGGTCATTTTCATGGACGTGGACATTCACCAGAACGTTTCTTTTCTCCTGACGATGATTATATTCCTCGTAGATCATCTATGGACCGGCCTGGTTTTGGATCACGAATAGCTACCACCAATACCAGAAACAATAGTCACTCCTCATTAGGTTATGCAATGGAGCAAGGGGCTCCTCCTGTGGCTGATGATGCACAGCCCTTGTATGGAGAGGACATTGTTTTTCGTATACTTTGTCCAGTTGAGAAAGTTGATCGTATTATTGGGGAATCAGATGGAATTGTAGAGTTCCTTCAGAATGAAGTTGGCGTAGATGTAAGGGTCATCAATCCTGTTGGCGGTTCAAATGAACAGATAGTTATCGTTACTTCCGAAGAGGGTCCTGATGATGTGCTGTTCCCAGCTCAGGAAGCTTTGCTACATATACAAACTCGTATTGTCGATCTTGTTCTTGATAAGGACAATTTTATAACCACCAGGCTTGTTGTTCCTTCTAGCTACATTGAATGCTTAGATGGAAAAGATGCATCACTATCGGAAATAAGGAGGTTGACTGGGGCTAATATTCAAATATTGCCTAGAGAAGAACTACCTTCCTGTGTTGCAAAAACTGATGAATTGGTACAGATTGTGGGAGAGATAAAAGCAGCCCGAGATGCTGTTGTTGAGGTGACCTCAAGATTAAGAAGTTACTTGTATAGGGATTTCTTTCAAAGGGACATAGTACCACCATCAGCCTCCCTACCTGGTTTTGAGGCATCTTCTTCCAATAATATTTCTCTAGTTGCTGAAACTTCCTCAATCTATCAGAATGTGCAAAGTATGGCAGCAGCCCTTCCATCAAAGGAAAGTGGAGGATCTAGCTTTGAGGCAGGAAAACAAAAAGAAAGTGACCGTGGAGATGATGTGCTCGGCAGTTTAAATAGGCTTGCTGTGCCTCTCGTCACAAGGAGTACACTTGAAGTTGTCATACCAGAGTATGCAGTTCCGAAGCTTACAGCAAAATCCAGAAGCAAGCTCGCACAGATAAGTGAGTTATCCGGAGCCAATGTGACTCTTGTTGAGGATAGACCAGATGTGACGCAGAAAATTATTCAGATATCTGGTACTCCAGAGCAGGCAGAGAGAGCCCAGAGCTTACTTCAAGGATTTATTTTGAGCACTCAAGAAGATGGCCCTTGA 1914 0.4775 MERSRSKRSYYYDQDYDSETVARTRPRYNHHYSASSHRHRGGGRHVKAQEPPVTVTTSYRILCHDLKAGGVIGKSGGIIKSIRQRTGAWINVHELMPGDEERIIEISDTRRQDPDRRMPSFSPAQEALLMIHERILEADAGVGEEDEEYGRGGGGGGGGGSGRVSTRLVVSRMHVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVISSRLRESQHRDRGHFHGRGHSPERFFSPDDDYIPRRSSMDRPGFGSRIATTNTRNNSHSSLGYAMEQGAPPVADDAQPLYGEDIVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDDVLFPAQEALLHIQTRIVDLVLDKDNFITTRLVVPSSYIECLDGKDASLSEIRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIVPPSASLPGFEASSSNNISLVAETSSIYQNVQSMAAALPSKESGGSSFEAGKQKESDRGDDVLGSLNRLAVPLVTRSTLEVVIPEYAVPKLTAKSRSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSTQEDGP* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4815 637 MobiDBLite consensus disorder prediction 143 163 - -
Lja1g4815 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 310 371 IPR036612 GO:0003723
Lja1g4815 637 CDD KH-I 563 626 - -
Lja1g4815 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 562 633 IPR036612 GO:0003723
Lja1g4815 637 MobiDBLite consensus disorder prediction 524 546 - -
Lja1g4815 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 159 243 IPR036612 GO:0003723
Lja1g4815 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 393 481 IPR036612 GO:0003723
Lja1g4815 637 Gene3D K Homology domain, type 1 53 162 IPR036612 GO:0003723
Lja1g4815 637 ProSiteProfiles Type-1 KH domain profile. 56 128 - -
Lja1g4815 637 ProSiteProfiles Type-1 KH domain profile. 163 233 - -
Lja1g4815 637 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 522 - -
Lja1g4815 637 Pfam KH domain 563 626 IPR004088 GO:0003723
Lja1g4815 637 Pfam KH domain 166 234 IPR004088 GO:0003723
Lja1g4815 637 Pfam KH domain 402 467 IPR004088 GO:0003723
Lja1g4815 637 Pfam KH domain 59 107 IPR004088 GO:0003723
Lja1g4815 637 MobiDBLite consensus disorder prediction 241 266 - -
Lja1g4815 637 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 522 - -
Lja1g4815 637 CDD PCBP_like_KH 165 234 - -
Lja1g4815 637 Gene3D K Homology domain, type 1 560 632 IPR036612 GO:0003723
Lja1g4815 637 SMART kh_6 560 630 IPR004087 GO:0003676
Lja1g4815 637 SMART kh_6 399 473 IPR004087 GO:0003676
Lja1g4815 637 SMART kh_6 315 388 IPR004087 GO:0003676
Lja1g4815 637 SMART kh_6 55 136 IPR004087 GO:0003676
Lja1g4815 637 SMART kh_6 162 238 IPR004087 GO:0003676
Lja1g4815 637 CDD PCBP_like_KH 58 132 - -
Lja1g4815 637 ProSiteProfiles Type-1 KH domain profile. 316 383 - -
Lja1g4815 637 Gene3D K Homology domain, type 1 163 242 IPR036612 GO:0003723
Lja1g4815 637 ProSiteProfiles Type-1 KH domain profile. 561 625 - -
Lja1g4815 637 Gene3D - 315 476 - -
Lja1g4815 637 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 53 108 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4815 Lja-Chr1 65532015 65538347 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4815 K21444 - gmx:100782999 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4815 1 65532015 65538347 Lja1g4815 1 65532015 65538347 ECH