Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4789 ATGTCCGACGCTTATTGGAGATACGCCGCCGAATCCCGCCACAACCCCTCCGCCATCGCCGCCAAGCGCGCCCGTTCCGATTACGATGTCTCTGGCGTTCATGACATGCCCGGTTACTATCCCCATGATGATGATAGAGGAGGGCTGCGAGTAATTAGAGATACTGAATCCCTTGATGCGTCCTATGAGCGTTACCTCCGTAGTGCGCAAGTTTCCTCTTTTGGTGAGGGACAGTCTACCAGAACCATCCGTGGGCGACTTCCCAGTCATTCCTTTGATGATTCACATGTCACAAGTATTGGTGGAGTAGACCGAGGACCAAGTGCAAAGGAAAAAATCCTGGGATTAAGTAGTGGAAGACCTGACCATTCTCTTCCACCTGATGCTACCAGTACACTGTTTGTAGAGGGTTTACCAACAAACTGCTCGAGACGGGAAGTAGCTCATATTTTCCGTCCTTTTGTTGGCTACAAGGAAGTCAGACTTGTTAGCAAGGAATCAAGACAACCTGGGGGTGATCCATTGGTACTTTGTTTTGTTGATTTTGAGAGTCCAGCTCATGCTGCAACTGCCAAGGATGCATTGCAGGGTTACAAATTTGACGAACTTGACCGCAACTCGGCCAATTTAAGGTTCCAATTTGCTCGCTATCCTGGTGCAAGGTCCGGTGGTGGTGGTGGGTTTCGTGGGAAGCGTTGA 699 0.4993 MSDAYWRYAAESRHNPSAIAAKRARSDYDVSGVHDMPGYYPHDDDRGGLRVIRDTESLDASYERYLRSAQVSSFGEGQSTRTIRGRLPSHSFDDSHVTSIGGVDRGPSAKEKILGLSSGRPDHSLPPDATSTLFVEGLPTNCSRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLVLCFVDFESPAHAATAKDALQGYKFDELDRNSANLRFQFARYPGARSGGGGGFRGKR* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4789 232 CDD RRM_RBPMS_like 131 211 - -
Lja1g4789 232 PANTHER PROTEIN MATERNALLY EXPRESSED GENE 5 16 225 - -
Lja1g4789 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 201 IPR000504 GO:0003723
Lja1g4789 232 MobiDBLite consensus disorder prediction 77 96 - -
Lja1g4789 232 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 16 225 - -
Lja1g4789 232 Gene3D - 127 217 IPR012677 -
Lja1g4789 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 217 IPR000504 GO:0003723
Lja1g4789 232 SUPERFAMILY RNA-binding domain, RBD 120 228 IPR035979 GO:0003676
Lja1g4789 232 SMART rrm1_1 132 206 IPR000504 GO:0003723
Lja1g4789 232 MobiDBLite consensus disorder prediction 77 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4789 Lja-Chr1 64824667 64838289 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4789 - - gmx:100800440 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4789 1 64824667 64838289 Lja1g4789 1 64824667 64838289 ECH