Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4768 ATGTGCATAACCACCCTCTTGAACGCGAACAACAACGTCACTCCGTTCATCTCCGGCGGCGGTGGTGGTGGTGGTGGTGTTAGATTCTCCTCCCTCATGGCCGCGACGGCGGCGCCATCTACTCAGACGGTGCTGTTCACGGCCTTGGCTGGCCTCGCTCTCGTCGCCGTCGTCTTCTACGGTGCAAGGAGGGGTCGTCTTAAATCACCATGGTCACGTAGGAAAAGAAAACACGCCCTTTCACCTCAGCAATGGAACAGCTTATTTACCCAAGATGGGAGAATTCGTGATGGTGGACTTAAGTTCCTGAAAAAAGTTCGCAGTGGAGGTGTTGAACCTAGCGTAAGAGCTGAAGTTTGGCCTTTCCTACTTGGAGTCTATGACTTGGACAGTACCAAAGAAGAAAGAGATGTTATAAGAACTCGAAATAGGAAGAAATACGAGAAACTCCGCAGACAATGCCGGCAACTGCTAAAGTCTAGTGGGAGCTTTAAGTTTGATGAAATAGGTGAAATCAGCTATGAAGGTGATGGTGGAAGTCTTGTTCAAGATTCTGGTTCTCCTAGTTCTGAAGATGCAACAAGTGCCAGAGAGTCCCTTTCTAGTGCGGAACATAGCCCAGATGTTGAATATTCAGATGATCCATCTAGAGGCCTCTTGGAAGGGGATGATGCTACTAACATCGGCAATGCTGATGCCTCTACACTGGATACTGATTCCACTGATTCAGACTCCTCTGAAAGTCCTGAGGTAATTCAGACATTTCCTTCTGATGAGGGTCCGGAAGAGAATGATTCCAGGACAGTTTCTAAGGAAAGTTCTTCTCCCTCTCAAATGAAAGTCCCATCCAAACTACGAACTAATGAAGACTTCGCCACATGGCAACGGATCATCCGGCTTGATGCAGTACGTGCCAATGCAGAATGGATGTCGTACAATCCCACCCAAGCTGTTGTACCGGAGAGTAGGGCACGTCGTTCAGCTGAGGCTGTTGGCTTGAAGGATTATGGTCACCTAGAACCTGGCAGAATCTTTCATGCTGCTCGACTAGTTGCTATCCTTGAAGCATATGCACTGTACGACCCTGAAATTGGCTACTGCCAGGGTATGAGCGATCTGCTATCTCCCATTATTAGTGTTATGACCGAAGATCACGAGGCTTTCTGGTGTTTTGTTGGATTTATGAAGAAGGCTAGGCAGAATTTCAGGCTTGATGAGGTGGGTATTAGGAGGCAACTTGATACAGTTGCAAAAATAATCAAATTTAAGGATGGCCACCTGTTCAGGCATTTGCAGAAGCTCCAGGCCGAGGATTGCTTTTTCGTATATCGGATGGTGGTTGTATTGTTTAGAAGGGAGTTGACATTTGAACAGACTCTTTGTCTTTGGGAAGTAATGTGGGCAGATCAAGCAGCAATAAGGGCAGGTATTGGAAAATCAGCATGGAGCAGAATCAGGCAGCGCGCCCCGCCAACAGATGATTTGTTGCTTTTTGCAATAGCAGCTTCAGTGTTACAGAGGAGGAAATTGATCATTGAGAAGTACTGTAGCATGGATGAGATCATTAAGGAATGCAATGGCATGGCAGGACATCTTGATGTTTGGAAGCTGCTGGATGATGCCCATAACTTGGTGGTCACCCTTCATGACAAAATGAAAATAGAGGCATCATTCTGA 1677 0.4681 MCITTLLNANNNVTPFISGGGGGGGGVRFSSLMAATAAPSTQTVLFTALAGLALVAVVFYGARRGRLKSPWSRRKRKHALSPQQWNSLFTQDGRIRDGGLKFLKKVRSGGVEPSVRAEVWPFLLGVYDLDSTKEERDVIRTRNRKKYEKLRRQCRQLLKSSGSFKFDEIGEISYEGDGGSLVQDSGSPSSEDATSARESLSSAEHSPDVEYSDDPSRGLLEGDDATNIGNADASTLDTDSTDSDSSESPEVIQTFPSDEGPEENDSRTVSKESSSPSQMKVPSKLRTNEDFATWQRIIRLDAVRANAEWMSYNPTQAVVPESRARRSAEAVGLKDYGHLEPGRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIISVMTEDHEAFWCFVGFMKKARQNFRLDEVGIRRQLDTVAKIIKFKDGHLFRHLQKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLFAIAASVLQRRKLIIEKYCSMDEIIKECNGMAGHLDVWKLLDDAHNLVVTLHDKMKIEASF* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4768 558 MobiDBLite consensus disorder prediction 228 253 - -
Lja1g4768 558 ProSiteProfiles TBC/rab GAP domain profile. 110 470 IPR000195 -
Lja1g4768 558 MobiDBLite consensus disorder prediction 203 220 - -
Lja1g4768 558 MobiDBLite consensus disorder prediction 270 286 - -
Lja1g4768 558 Pfam Rab-GTPase-TBC domain 349 469 IPR000195 -
Lja1g4768 558 PANTHER GTPASE ACTIVATOR PROTEIN OF RAB-LIKE SMALL GTPASES-LIKE PROTEIN 32 552 - -
Lja1g4768 558 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 32 552 - -
Lja1g4768 558 MobiDBLite consensus disorder prediction 180 202 - -
Lja1g4768 558 Gene3D - 406 553 - -
Lja1g4768 558 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 93 430 IPR035969 -
Lja1g4768 558 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 270 402 - -
Lja1g4768 558 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 407 545 IPR035969 -
Lja1g4768 558 SMART tbc_4 107 496 IPR000195 -
Lja1g4768 558 MobiDBLite consensus disorder prediction 175 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4768 Lja-Chr1 64385307 64390656 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4768 - - gmx:100791150 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4768 1 64385307 64390656 Lja1g4768 1 64385307 64390656 ECH