Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4725 ATGGCCGCCGCCACTACTCCCTTGAACTTCCACTTCCCCTCACCATCACCCTCATCTCACACTTCCTCTACACACTCTGCACTTTCTCTCCCTCCCTTCTCCCTAACCTCAACATTCTGGGGGTTCAAACTCAAGCATGCTGCAACTTCTACTGTTTCTGCTGCTGACAATTCCACAAACACCTTCCGTGCAGTTCGCAATTCATGGGACGGTCCACTCTCCTCCGTCAAACTCATCATCCAGGGCAAGAATCTCGACCTCACCGACGCTGTCAAGCAGCACGTGGAGGACAAGGTGGGGAAAGCCGTTCAGAAGCACAGCCACATAGTCAGAGAGATTGATGTCAGGCTTTCTACTCGAGGTGGAGGAGAGTTTGGGCGAGGACCCAGAACTAGTAGATGTGAGGTGACTTTGTTTACCAAGAGGCATGGCGTCGTGCGGGCTGAGGAGGATTCTGAAACTACCTATGCAAGTATAGATTTGGTGTCGTCCATCATTCAGAGAAAGCTGAGGAAGATCAAGGAAAAAGTGTCTGATCACGGTCGCCACATGAAAGGGTTCAATAGGGCGAAGGTTAGGGAGCCGGTAGAAGTGGAAGTGCCCTTGGAGGAGGATGATGATATATCCCCACTGGAAGAGGAGGGAGAAGCAACTTTGGTCGAGGTTGTTCGGACAAAGTACTTTGACATGCCACCATTAACTGTGTCTGAAGCAATTGAGCAGCTTGTAAATGTTGATCATGCCTTTTATGCTTTCCGAAATGAAGAAACTGGGGAGATTAATATTGTATACAAAAGAAAAGAAGGAGGTTATGGACTCATTATACCCAAAGGAAATGGACAAGCAGAGAAATTGGAGCCTTTAATGGTTGAACCCGCTAGAGAAGCCTCTCTAAAAGAATGA 903 0.4817 MAAATTPLNFHFPSPSPSSHTSSTHSALSLPPFSLTSTFWGFKLKHAATSTVSAADNSTNTFRAVRNSWDGPLSSVKLIIQGKNLDLTDAVKQHVEDKVGKAVQKHSHIVREIDVRLSTRGGGEFGRGPRTSRCEVTLFTKRHGVVRAEEDSETTYASIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRAKVREPVEVEVPLEEDDDISPLEEEGEATLVEVVRTKYFDMPPLTVSEAIEQLVNVDHAFYAFRNEETGEINIVYKRKEGGYGLIIPKGNGQAEKLEPLMVEPAREASLKE* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4725 300 CDD RaiA 77 176 IPR003489 GO:0044238
Lja1g4725 300 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 221 273 IPR032528 -
Lja1g4725 300 Hamap Ribosome hibernation promoting factor [hpf]. 76 277 IPR034694 -
Lja1g4725 300 PANTHER 30S RIBOSOMAL PROTEIN 64 280 - -
Lja1g4725 300 TIGRFAM yfiA: ribosomal subunit interface protein 77 181 IPR003489 GO:0044238
Lja1g4725 300 MobiDBLite consensus disorder prediction 1 27 - -
Lja1g4725 300 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 79 177 IPR003489 GO:0044238
Lja1g4725 300 Gene3D - 77 188 IPR036567 -
Lja1g4725 300 Gene3D - 232 281 IPR038416 -
Lja1g4725 300 PANTHER 30S RIBOSOMAL PROTEIN 64 280 - -
Lja1g4725 300 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 77 183 IPR036567 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4725 - - lja:Lj1g3v1074620.1 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4725 1 63684453 63688206 Lja1g4725 1 63684453 63688206 ECH