Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4715 ATGGATAATTCCACCCAAGACTCTCACCTCCGATCCGAAAACTCCGTCACCTATGACTCCCCTTACCCTCTCTACGCCATGGCCTTCTCCCCCAACAACAACAACAACTCCCACTCCGCCGCCACCACCACCCAACGCCTCGCCGTCGGAAGCTTCCTCGAAGAATACACCAACCGCGTCGACATCCTCTCCTTCAACCCCGACACCCCCTCCATAAGACCCCAACCTTCCCTCTCCTTCGACCACCCTTACCCGCCGACCAAGCTCATGTTCCACCCCTCCACCCACTCCCCGCTTCTCAAATCCTCCGCCGTCGACCTCCTCGCCACCTCCGGCGACTACCTCCGCCTCTGGGAGGTCCGGGAGAATTCCGTCGAGGCGCTTTCTCTCTTCAACAACAGCAAAACCAGCGAGTTCTGCGCCCCGCTTACCTCCTTCGATTGGAATGAAATCGAGCCCAAGCGTATCGGAACCTCCAGCATCGACACCACCTGCACCATCTGGGACATAGAGCGCGGCGTTGTGGAGACGCAGCTCATCGCGCATGACAAGGAGGTCTACGACATCGCATGGGGTGAGGCTAGGGTTTTCGCTTCCGTTTCCGCTGATGGGTCTGTGAGGATCTTCGATCTGAGGGACAAGGAGCACTCTACCATCATCTATGAGAGCCCTCAACCGGATACCCCTTTGCTCCGTTTGGCTTGGAACAAGCAGGATTTGAGGTACATGGCTACTATCTTGATGGACAGCAATAAGGTTGTGATATTGGATATTAGGTCGCCGACCATGCCGGTGGCGGAGTTGGAGAGGCACCGTTCGTGTGTCAATGCCATTGCTTGGGCTCCTCGGAGCTCGAAGCATATTTGTTCTGCTGGGGATGATTCTCAGGCTCTTATTTGGGAGTTGCCTACTGTGGCTGGACCTAATGGGATTGACCCTATGTTCATGTATTCTGCTGGTTGTGAGATTAACCAGCTGCAGTGGCCTGCGGCTCAGCCGGATTGGATTGCGGTTGCTTTTGCGAACAAGATGCAGCTTTTGAAGGTTTAA 1050 0.5543 MDNSTQDSHLRSENSVTYDSPYPLYAMAFSPNNNNNSHSAATTTQRLAVGSFLEEYTNRVDILSFNPDTPSIRPQPSLSFDHPYPPTKLMFHPSTHSPLLKSSAVDLLATSGDYLRLWEVRENSVEALSLFNNSKTSEFCAPLTSFDWNEIEPKRIGTSSIDTTCTIWDIERGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTMPVAELERHRSCVNAIAWAPRSSKHICSAGDDSQALIWELPTVAGPNGIDPMFMYSAGCEINQLQWPAAQPDWIAVAFANKMQLLKV* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4715 349 ProSitePatterns Trp-Asp (WD) repeats signature. 288 302 IPR019775 -
Lja1g4715 349 PANTHER WD REPEAT CONTAINING PROTEIN 1 349 IPR045159 -
Lja1g4715 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 219 IPR001680 GO:0005515
Lja1g4715 349 SMART WD40_4 261 301 IPR001680 GO:0005515
Lja1g4715 349 SMART WD40_4 172 210 IPR001680 GO:0005515
Lja1g4715 349 SMART WD40_4 73 119 IPR001680 GO:0005515
Lja1g4715 349 SMART WD40_4 130 169 IPR001680 GO:0005515
Lja1g4715 349 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Lja1g4715 349 Pfam WD domain, G-beta repeat 179 210 IPR001680 GO:0005515
Lja1g4715 349 PANTHER PROTEIN TRANSPARENT TESTA GLABRA 1 1 349 IPR031104 -
Lja1g4715 349 SUPERFAMILY WD40 repeat-like 22 304 IPR036322 GO:0005515
Lja1g4715 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 302 IPR001680 GO:0005515
Lja1g4715 349 Gene3D - 7 348 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4715 Lja-Chr1 63095704 63097559 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4715 K11805 - cpap:110823444 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4715 1 63095704 63097559 Lja1g4715 1 63095704 63097559 ECH