Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4701 ATGGCAGCCATTAACGTGCTTGTTGTGTTTTTGTTCTGCACTTGTGTAAATCTTTCTGCTCTGGTGTGGTGTGAGGAAGACGATGACTATGCCAAAGCGATTCTTAGTGCAGCCAACAAGGACAAAGATTGGTTGGTTCAGGTGAGAAGGGAGATTCATGAGCACCCAGAACTGGGTTTTGAAGAGCACAACACCAGTGCTCTTATCCGCAGTGAACTTGACAAGCTTGGTATCACTTACACATACCCAGTTGCCAAAACCGGAATCGTTGCCCAAATTGGCTCTGGTTCTCGTCCCATCATTGCTATTCGTGCTGATATGGATGCACTTCCTTTGCAGGAGCTTGTTGAGTGGGAGCACAAGAGCAAAATTGATGGCAGAATGCATGCTTGTGGACATGATGCTCATACAACAATGCTACTTGGGGCTGCAAAGTTGCTGCATCAGCGCCAAGATAAACTTCAGGGAACTGTGAGACTTATTTTTCAACCAGCTGAGGAGGGAGCTAGGGGCGCCTCTCAAGTGATAAAAGAAGGAGTTCTTCAAGATACAGAAGCAATTTTCGCTGTTCATATTGATGCTGAGACGCCTACTGGAGCCATAGCATCCATTCCAGGGCCTTTTACAGCTGCTGGATGCATCTTTGAGGCAAAAATTGTAGGAGTGGGTGGTCATGCTGCTTCACCCCACAGGAATGTGGATCCAGTGCTGGCTACATCATTTTCAATATTAGCATTACAACAGCTTGTCTCAAGGGAAAATGACCCTCTTCAGAGTCAAGTGTTATCAGTGACTTATGTCGAAGGTGGGACTGCACTAAATGTGATCCCACCCCATGTAAAATTTGGAGGCACCCTGAGGAGCCAGACAACTGAGAGAGTGTACCATTTCAGACAGAGATTAAAGGAGGTTATTGAAGCACAGGCAGTTGTGCACAGATGCGAGGCCTATGTTGATTTCAAAGATGAGGACTCTACTCCATATCCTGCTGTTGTCAATGACAATGATTTACATCTGCATGTGGAAAGAGTTGGCAAGCTTCTGTTTGGTCCAGACAATGTCCATGCAGGCAAGAAGGTGATGGCCGGCGAAGACTTTGCATTTTATCAGGAGGTAATTCCCGGAATATTGTTTTCCATTGGGATCAGAAATGAGAAAGTAGGATCAATTCACTCCCCGCACTCCCCTTTATTCTTTCTTGATGAGGAAGTTCTTCCAATTGGAGCAGCTCTGCACACTGCTATTGCTGAGTTATATTTAAATGAGCATAGTGTTCAGTAA 1281 0.4543 MAAINVLVVFLFCTCVNLSALVWCEEDDDYAKAILSAANKDKDWLVQVRREIHEHPELGFEEHNTSALIRSELDKLGITYTYPVAKTGIVAQIGSGSRPIIAIRADMDALPLQELVEWEHKSKIDGRMHACGHDAHTTMLLGAAKLLHQRQDKLQGTVRLIFQPAEEGARGASQVIKEGVLQDTEAIFAVHIDAETPTGAIASIPGPFTAAGCIFEAKIVGVGGHAASPHRNVDPVLATSFSILALQQLVSRENDPLQSQVLSVTYVEGGTALNVIPPHVKFGGTLRSQTTERVYHFRQRLKEVIEAQAVVHRCEAYVDFKDEDSTPYPAVVNDNDLHLHVERVGKLLFGPDNVHAGKKVMAGEDFAFYQEVIPGILFSIGIRNEKVGSIHSPHSPLFFLDEEVLPIGAALHTAIAELYLNEHSVQ* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4701 426 TIGRFAM amidohydrolases: amidohydrolase 45 408 IPR017439 GO:0016787
Lja1g4701 426 Gene3D Zn peptidases 45 405 - -
Lja1g4701 426 PANTHER PEPTIDASE M20 FAMILY MEMBER 7 424 IPR017439 GO:0016787
Lja1g4701 426 CDD M20_IAA_Hyd 45 420 IPR044757 GO:0009850|GO:0016787
Lja1g4701 426 Pfam Peptidase dimerisation domain 215 310 IPR011650 -
Lja1g4701 426 Gene3D - 210 328 - -
Lja1g4701 426 SUPERFAMILY Bacterial exopeptidase dimerisation domain 214 320 IPR036264 -
Lja1g4701 426 Pfam Peptidase family M20/M25/M40 102 415 IPR002933 GO:0016787
Lja1g4701 426 PIRSF Amidohydrol_AmhX 30 424 IPR017439 GO:0016787
Lja1g4701 426 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 3 7 424 - -
Lja1g4701 426 SUPERFAMILY Zn-dependent exopeptidases 33 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4701 Lja-Chr1 62158708 62162753 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4701 K14664 - gmx:100777587 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4701 1 62158708 62162753 Lja1g4701 1 62158708 62162753 ECH