Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4616 ATGAATGATATACGAGAAAATCCGAGACGGTCCGCTGGACCTAACCAACTGTTGTTATCCATTGATGACGAACTTTGGCTGATGGCTGAACAGAGGACTCAAGAAATACTTGGCACAGTTCAACCAAATGTAGTTTCTGAGGTGAACAGAAGGCAGATTATTGATTATGTTCAGAGGCTGATTGGAGGTTTCTATGGATCAGAGGTCTTCCCATTTGGATCAGTCCCCCTAAAAACCTATCTTCCTGATGGAGATATTGACTTGACAGTTCTCAGTCATGACAATGAAGAGGAGGATATGGCACAATTGGTGTGCAATGTACTTGAAATGAACGATGAGCCTGAATACCCTGTAAAAGACATACAACTTATACGAGCACAGGTAAAGGTTGTGAAATGCACAGTAAAAAATATAGCAGTTGACATCTCTTTCAATCAGATGGCTGGGCTCTTTGCTCTACGCTTTCTGGAGCAGGTTAACGAAATTCTTGGGAAAAACCATCTTTTCAAACATAGTATTCTCTTAGTCAAAGCTTGGTGCTATTATGAGAGCCGAATTCTCGGTGCACACCATGGCTTGTTATCTACATATGCAGTGGAAATACTAGTCTTGTATATTATCAACTGTTATCATGCCTCTGTGCGTGGTCCTCTAGAGGTTCTGTACAGATTTTTAGACTACTACAGCAAATTTGATTGGAGCCATAATTATGTCAGTATAGAAGGTCCAATAGCCTTATCTTCTCTTCCAGAAATTGTCGAGATACCGGATTCTGATAGGGGTGAATTGTTGCTCAACAAAGAGTTTCTGAAAACTTACAGGGAGATGCATGCGGCTTACTCAAAGGCAAACGATGCTGCGAACCCTATATTCACCACCAAGCATTTGAACATTTTGGATCCTTTAAAACACAACAACAACCTAGGACGCAGTGTCAACAAAGGCAATTTGCACCGAATAAAATTTGCTCTTTCCTTCGGTGCTCGAAAGCTTAAGGACATCTTTAGACTTCCAGGACAACGCATGGGTGCAGCCCTTGAAAGGTTTTTCATGAACACTTTGAATAGAAATGGGAAAGGACAACGGCCAGATATTGATTTTCCTGTTCCTGCATTTGGCACTGAAAGATTTGTAGAGCCTGTCCTTTATGGAGACTCTGACAGTTTTTATGGTGGCATACGATATGTTCAGTCGGGCCGTAATTATGGCGCGCCACCCCCTCCACTTCCTGGTTCTCAAACTTCGCCTTCTCAGGCTGATACCCTTACACTGCAGGCACATCAAAACTGGTCTATGTTGTATCAAAGAGGTACTAATGTCTATGCCCCTAAGAAGGCTCACTATCCTCCAAATTCAAATGCTTCTCATGCCCCCTACAGCCTTGAAGAAGCAGGAAAGTCACGAGGAACGGGGCCATACATACCTGACATGACTAATAATTACTATTGGGAAATGCGTGCAAGACTGATGAGGCCAAGCAGATTCGCTCCTGATTATGTTCCTGCTAATGCTCCGGATAGTGTTCCAGATAATGTTCCTGATAATCCTCCTGATAATGTTGGACCTCCTAAATCACCTGAGGGAAAGCAACTAGTGGAGGCTCATGCTGGTGCGGACCTGAATGTAAATTCAAGGTCATTTGAGCTCGTGAAGGAAGATTTCCCTGATCTTACAAGCGGCATTACCGGCTCAGCAGCAGCCAACGAGTCTGCTAAGTTAATTCGGAACACTGGCTCATCAGCGGCCGACGACAACATTCAAAATACCGGCTCAGCAGCAGCCGACGAGTCTGCTCAGTTAATTCGGAACACTGGCTCATCAGCAGCCGACGGCATTCAGAATATCGGCTCAGCAGCAGCCGACGAGTCTGCTCAGTTAATTCAGAACACCGGCTCATCAGCAGCCGACGAGTCTGCTCAGTTAACCAAGCAGGACAAGATTTCCAAGAGTTTCTCATCCCCTGCACTGAATATTGAGTTTGGAACTTTCAGGATGTCACAATCACTTGCAGCACTAAGTTTGGCAACAAAAAGCGAGAAAGGAGAATCCGGTTTTTCATCATCTCCAAGCCCTGTCTTAGTTATTGAAGGACCAGCAATGAAAGGGAAAGAGAAATTCCCTGGGAGCAGTGAGAAGATGGGTTGA 2145 0.4438 MNDIRENPRRSAGPNQLLLSIDDELWLMAEQRTQEILGTVQPNVVSEVNRRQIIDYVQRLIGGFYGSEVFPFGSVPLKTYLPDGDIDLTVLSHDNEEEDMAQLVCNVLEMNDEPEYPVKDIQLIRAQVKVVKCTVKNIAVDISFNQMAGLFALRFLEQVNEILGKNHLFKHSILLVKAWCYYESRILGAHHGLLSTYAVEILVLYIINCYHASVRGPLEVLYRFLDYYSKFDWSHNYVSIEGPIALSSLPEIVEIPDSDRGELLLNKEFLKTYREMHAAYSKANDAANPIFTTKHLNILDPLKHNNNLGRSVNKGNLHRIKFALSFGARKLKDIFRLPGQRMGAALERFFMNTLNRNGKGQRPDIDFPVPAFGTERFVEPVLYGDSDSFYGGIRYVQSGRNYGAPPPPLPGSQTSPSQADTLTLQAHQNWSMLYQRGTNVYAPKKAHYPPNSNASHAPYSLEEAGKSRGTGPYIPDMTNNYYWEMRARLMRPSRFAPDYVPANAPDSVPDNVPDNPPDNVGPPKSPEGKQLVEAHAGADLNVNSRSFELVKEDFPDLTSGITGSAAANESAKLIRNTGSSAADDNIQNTGSAAADESAQLIRNTGSSAADGIQNIGSAAADESAQLIQNTGSSAADESAQLTKQDKISKSFSSPALNIEFGTFRMSQSLAALSLATKSEKGESGFSSSPSPVLVIEGPAMKGKEKFPGSSEKMG* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4616 714 Coils Coil 93 113 - -
Lja1g4616 714 Gene3D - 211 336 - -
Lja1g4616 714 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 1 687 - -
Lja1g4616 714 SUPERFAMILY PAP/OAS1 substrate-binding domain 168 336 - -
Lja1g4616 714 MobiDBLite consensus disorder prediction 498 529 - -
Lja1g4616 714 CDD NT_PAP_TUTase 49 156 - -
Lja1g4616 714 MobiDBLite consensus disorder prediction 448 473 - -
Lja1g4616 714 MobiDBLite consensus disorder prediction 678 714 - -
Lja1g4616 714 SUPERFAMILY Nucleotidyltransferase 16 187 IPR043519 -
Lja1g4616 714 Gene3D Beta Polymerase, domain 2 28 164 IPR043519 -
Lja1g4616 714 Pfam Nucleotidyltransferase domain 52 129 IPR002934 GO:0016779
Lja1g4616 714 PANTHER NUCLEOTIDYLTRANSFERASE DOMAIN PROTEIN 1 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4616 Lja-Chr1 60596321 60602114 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4616 - - lja:Lj1g3v1182060.1 696.041