Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4614 ATGGCTGTGCGAACCCTGTTGAGCAGAAAAACCCTAGCCTCCGTGCTCCTCCGCAATGACATCGGAGCGGGAGGCATGGCGGCGGCAGCAGCAGCAGGAGCTGCTCAAACTCATTCCCGTGGCATCCATGCCCTCACGCTTCCCGATCTCGGTTACGATTATGGCGCCTTGGAGCCTGTCATCAGCGGCGAAATCATGCAAATCCATCACCAGAAGCATCACCAGACTTACATCACCAACTACAACAAGGCTCTCGAGCAGCTTCAAGATGCCATCGCCAAGTCCGATTCCTCAGCCGTCGTTAAGCTCCAGAGTGCAATCAAATTCAATGGCGGAGGTCATGTCAACCATTCCATTTTCTGGAAAAATCTAGCTCCCCCTCGTGAAGGAGGTGGAGAATCACCCCATGGCTCCTTGGGATGGGCCATTGACACACATTTTGGTTCTTTTGAAGCATTGATAAAAAAGGTCAACGCAGAAGGTGCGGCACTACAGGGGTCTGGATGGGTCTGGCTTGGTCTGGACAAAGAGTTCAACAAGCTTGTTGTTGAAACCACCGCAAACCAGGATCCACTGGTTACTAAGGGATCAAGCTTGGTTCCATTGTTTGGTATAGATGTTTGGGAACATGCATACTACTTACAGTACAAGAATGTTAGACCAGACTATTTGAAGAACATTTGGAAAGTTATCAACTGGAAATATGTCAGTGAAGTGTACGAGAAAGAGAGTTCTGCTTGA 741 0.4926 MAVRTLLSRKTLASVLLRNDIGAGGMAAAAAAGAAQTHSRGIHALTLPDLGYDYGALEPVISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKLQSAIKFNGGGHVNHSIFWKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQGSGWVWLGLDKEFNKLVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYVSEVYEKESSA* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4614 246 PRINTS Manganese superoxide dismutase signature 48 59 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lja1g4614 246 PRINTS Manganese superoxide dismutase signature 69 82 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lja1g4614 246 PRINTS Manganese superoxide dismutase signature 108 121 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lja1g4614 246 PRINTS Manganese superoxide dismutase signature 164 172 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lja1g4614 246 PRINTS Manganese superoxide dismutase signature 204 216 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lja1g4614 246 Gene3D Fe,Mn superoxide dismutase (SOD) domain 62 125 IPR036324 -
Lja1g4614 246 PANTHER SUPEROXIDE DISMUTASE 2 36 243 - -
Lja1g4614 246 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 46 125 IPR019831 GO:0004784|GO:0006801|GO:0046872
Lja1g4614 246 ProSitePatterns Manganese and iron superoxide dismutases signature. 206 213 IPR019833 GO:0004784|GO:0006801|GO:0046872
Lja1g4614 246 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 130 242 IPR036314 -
Lja1g4614 246 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 42 126 IPR036324 -
Lja1g4614 246 Pfam Iron/manganese superoxide dismutases, C-terminal domain 135 238 IPR019832 GO:0004784|GO:0006801|GO:0046872
Lja1g4614 246 PIRSF MnSOD_FeSOD 21 246 IPR001189 GO:0004784|GO:0006801|GO:0046872
Lja1g4614 246 PANTHER SUPEROXIDE DISMUTASE 36 243 - -
Lja1g4614 246 Gene3D - 126 245 IPR036314 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4614 Lja-Chr1 60577223 60581409 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4614 K04564 - gmx:100785490 417.542