Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4583 ATGGGTGAAGATAACCGGCGGGTTGGTGGGTTTTCAGCTGGTCTGGCTTTGATATTGAACGGCGAGGACAGTAAGAAATGTTCGTCGAAAAATCGGCTTCTTTCTTGCTGTGATGATTTAGGTCAACAGTCTGTGGAGCGAACGCTTGAGTACGTTTTTGGCCTCCCCAACAGATCACTCAATTCATTGGCTGGTCCGGTGGACCGCGATTTTATTCGCTCCGTTATTAGGAAAGATTTCTCAAGATGTAATGCCGAATCAGGCGATTCTTCTACGGAAAGAGAAGGGATTTTTATTGGTAATAAAAATGGCAACGGGCCTGATGTTGTAGACCTTGAAGAATCTAGCATCTGCGGCGATCTTAAAATCATCAAGTCACCTTTTCTTATAGAGAGCTTGGCAATGTTCAGTAGTGCGAGGGCTAATACTTGTGTTTGGAAAGGAAAGTGGATGTATGAAGTTATGTTAGAAACATCTGGTATACAGCAGATTGGTTGGGCCACTCTTTCTTGCCCTTTCACTGACCATAAAGGTGTTGGCGATGCTGATGATTCATATGCTTATGATGGGAGACGAGTTAGCAAGTGGAACAAGGATGCAGAGACATATGGTCAGTCATGGGTTGTTGGTGATGTCATTGGATGTTGCATAGATTTAGATCGAGATGAAATACTATTCTTCAGGAATGGCAATCCACTTGGGGTGGCATTCCGAGGAATTCGAAAAATGGGTCCTGCTTTTGGTTATTATCCAGCAATTTCCCTCTCCCAGGGCGAAAGATGTGAACTGAACTTTGGGGCACGGCCCTTCAAGTACCCAGTTGAAGGCTACCTTCCTCTTCAGGCTCCTCCCTCCAAGAGCTACTTTTTGACACGATTGCTACAATGCTGGTCAAGGCTTTTGGACATGCATTCAGTAGAGCGAGCTGATCATTCTTTAGCTCAGAAATTGAGAAGAGTGAAGAAGTTTGTTTCATTGGAAGAAATTTTTCACCCTGCCTCTGATGCTATTTGTGAGGAATTGTTCTCTATAATTGAAGCAGATGCTGGGAACACAGAGTATATGGTTTGGGGTCCTTTGTTGTCCTTTATGTTTGAAGTTTTAGGATTTCATCCACCCCATGACTATTCAAGCTTGGATAAAGTAGTTGAAACACTACTACAATTTCAAGGATCACATTTCCTGTTTTACCACATGATAAATGCCCTTTCCTGTGGTTGTAAAGTAGCCCCGTTAGTCCTCACTGAATGTCCTTACTCTGGATCATATTCTCACCTTGCATTAGCATGTCATCTACTAAGACGAGAGGAACTAATGGTGCTTTGGTGGAAGTCACCAGATTTTGAATTTTTGTTTGAAGGCTTTCTGTCACAAAAGACTCCAAACAGGCAGGATCTTGACTCATTGATACCAACTGTTTGGTGGCCTGGTTCCTGTGAAGATGCATCTTATGAAGGTAACATGATGTTGACAACCACAGCTTTGTCTGAATCAATCAGTAAGATTGAGGAGAAGCATAGGGACCTTTGTCGCTTAGTTATACAATTTATACCGCCTACAACACCTCCCCAATTACCTGGAGCCGTTTTCAGGACATTCTTACAAAGCCTTCTGCTGAAGAACAGAGGAGCAGAACGAAATGTCCCGCCACCTGGAGTTTCTAGTAACTCGGTTCTTGTTTCAATTTATACAGTTTTGCTCCATTTTCTATCTGAAGGATTTGCGTTGGGTGAAGTCTGTGGCTGGTTAAAGAGCTGCAAATCAGATGTTGGTTTCCTTCACAGAGGTGGTCAACGAAGTTTCCCCACACGCTTGTTTCTGAAAAATGATCCCCATAGAATTAATATTTCCCGGCTTGGGGGATCCTACACCCATTTATCAAAGATACACCCTATAGTTGAGCATGAAATGGAAGTGGTTGAATGGGATGAAGGTTGCATGGATAATGAAGAAACCAGAGTAACGCATTCGACCAGGCAGAAGCCGTGCTGTTGTTCTAGTTACGATTCTGATTTTACAAGAAACTTGAAGGTTCCAGCTAAATACCTGGCCAAAGGTTCTCGGGGCCATTGTAGCTCCATTCCAGAAAGACCTGCTCATGTTGCTGCCGAATGCAGTGATGAGGGTTTGAACGATGAAATAACAGATAAGCCTAGCTCCAGTGATCAATCTGAACCTGAGTACGGTTACCGCCAAGTGTACCATATGAAATCTGTATCAAGGGATACTAATATGTCTACAGCTACCCTTCAAGAAGAAGAGCTACTTGATGCTTTGTTGTGGTTGTATCATGTTGGTCTTGCTCCAAATTTTAAGCAGGCGTCATACTACATGACTCATCAGGCACAATCAATCTCCCTTTTAGAGGAAACAGATAAACAAATACGAGAACGATCTTGTGGCGAGAAATTGAAGCGTTTGAAAGAAGCTCGCAATGAATATAGAGAAGAGGTTATTGATTGTGTTAGGCATTGTTCTTGGTATCGCATCTCTCTATTATCTCGATGCAAACAGCGAGGAATGTATGCAATGTGCATGTGGGTTGCCCAGTTGTTACTGGTTCTGAGCAATATGGATTCAGTGTTCATCTACATCCCTGAATATTATCTGGAAGCATTGGTTGATTGCTTTCATGTGTTGCGGAAAAGTGATCCTCCATTTGTTCCTTCCACAATTTTGATCAAGCAAGGACTCACTTCATTTGTCACTTTTGTAGTTACTCATTTCAACGATCCAAGGATATCAAGTGCAGATCTTAGGGATCTTCTTCTCCAGTCGATATCCGTCCTGGTGCAGTACAGAGAGTATTTGGCTGCTTTTGAGAGCAATGAAGCAGCCACCCAAAGGATGCCCAAAGCTTTATTATCAGCATTTGATAATAGATCTTGGATCCCAGTGATGAACATTCTCCTGCGATTATGCAAGGGTAGTGGTTTTAGTTTTTCAAAGACTGGAGAGTCATCTTCATCATCAGTTCTATTCCAAAGGTTGCTAAGAGAAGCTTGCATTAACGATGAAGGATTATTTTCATCTTTTCTAAACCGTCTATTTAATACACTTAGCTGGACCATGACTGAGTTCTCCGTTTCTGTTCGAGAAATGCAAGAAAAGTACCAGGTAATAGAGTTTCAGCAAAGGAAATGTTGTGTCATATTTGATCTTTCATGTAATCTTACAAGGATTCTGGAGTTCTACACTCGTGAGATTCCTCAAGCATTCTTGTCTGGTCCAGAAACAAACCTACGGAGGTTAACTGAATTGGTTGTATTTATCTTGAATCATATTACTTCTGCGGCTGATGCTGAGTTCTTTGACTTATCATTTAAACGGCATAACCAATCTTCGGAGAAAGTAAATCGAGGCATGATTTTGGCACCTCTTGTTGGGATCATGTTAAATTTATTGGATGCTACAAATTTGGCAGAAGATCCCGAGAACAATGATCTTTTGGATGTTTTTGCAAGCATGGAGTGTCCAGATACTGTTCATTATGGTTTTCAGTATCTTCTGGATTATAACTGGGATGGGTCTTGTCGCCGGGAAGCTTTTCTGGCAAAATACGAGCAGCTAGAGAATTTTCTCAGCCTCCTTACTTGCCGCATTGTGTCACGGCATGATAAAGTGGAAAGTGTAGGAGATACAGACCTAGAGGATAGCTTATGCTGCATATGTTATGCATGTGAAGCAGATGCCCAGATTGAACCATGTTCACATAGGTCTTGCTATGGCTGTATAACCAGACATCTTTTGAACTGCCAGAGATGTTTCTTTTGCAATGCTACAGTGACAGATGTGAGCAGAATATGTGAGAAGACAGGCTGA 3822 0.421 MGEDNRRVGGFSAGLALILNGEDSKKCSSKNRLLSCCDDLGQQSVERTLEYVFGLPNRSLNSLAGPVDRDFIRSVIRKDFSRCNAESGDSSTEREGIFIGNKNGNGPDVVDLEESSICGDLKIIKSPFLIESLAMFSSARANTCVWKGKWMYEVMLETSGIQQIGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVVGDVIGCCIDLDRDEILFFRNGNPLGVAFRGIRKMGPAFGYYPAISLSQGERCELNFGARPFKYPVEGYLPLQAPPSKSYFLTRLLQCWSRLLDMHSVERADHSLAQKLRRVKKFVSLEEIFHPASDAICEELFSIIEADAGNTEYMVWGPLLSFMFEVLGFHPPHDYSSLDKVVETLLQFQGSHFLFYHMINALSCGCKVAPLVLTECPYSGSYSHLALACHLLRREELMVLWWKSPDFEFLFEGFLSQKTPNRQDLDSLIPTVWWPGSCEDASYEGNMMLTTTALSESISKIEEKHRDLCRLVIQFIPPTTPPQLPGAVFRTFLQSLLLKNRGAERNVPPPGVSSNSVLVSIYTVLLHFLSEGFALGEVCGWLKSCKSDVGFLHRGGQRSFPTRLFLKNDPHRINISRLGGSYTHLSKIHPIVEHEMEVVEWDEGCMDNEETRVTHSTRQKPCCCSSYDSDFTRNLKVPAKYLAKGSRGHCSSIPERPAHVAAECSDEGLNDEITDKPSSSDQSEPEYGYRQVYHMKSVSRDTNMSTATLQEEELLDALLWLYHVGLAPNFKQASYYMTHQAQSISLLEETDKQIRERSCGEKLKRLKEARNEYREEVIDCVRHCSWYRISLLSRCKQRGMYAMCMWVAQLLLVLSNMDSVFIYIPEYYLEALVDCFHVLRKSDPPFVPSTILIKQGLTSFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLAAFESNEAATQRMPKALLSAFDNRSWIPVMNILLRLCKGSGFSFSKTGESSSSSVLFQRLLREACINDEGLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCCVIFDLSCNLTRILEFYTREIPQAFLSGPETNLRRLTELVVFILNHITSAADAEFFDLSFKRHNQSSEKVNRGMILAPLVGIMLNLLDATNLAEDPENNDLLDVFASMECPDTVHYGFQYLLDYNWDGSCRREAFLAKYEQLENFLSLLTCRIVSRHDKVESVGDTDLEDSLCCICYACEADAQIEPCSHRSCYGCITRHLLNCQRCFFCNATVTDVSRICEKTG* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4583 1273 Coils Coil 797 817 - -
Lja1g4583 1273 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 138 IPR045737 -
Lja1g4583 1273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 41 1271 - -
Lja1g4583 1273 SMART SPRY_3 147 269 IPR003877 GO:0005515
Lja1g4583 1273 CDD SPRY_RNF123 138 266 IPR035773 -
Lja1g4583 1273 Pfam SPRY domain 149 267 IPR003877 GO:0005515
Lja1g4583 1273 Gene3D - 119 295 IPR043136 -
Lja1g4583 1273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1214 1269 IPR013083 -
Lja1g4583 1273 SUPERFAMILY Concanavalin A-like lectins/glucanases 132 273 IPR013320 -
Lja1g4583 1273 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 41 1271 IPR045129 GO:0004842
Lja1g4583 1273 CDD RING-HC_RNF123 1219 1259 - -
Lja1g4583 1273 Pfam Ubiquitin elongating factor core 760 958 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Lja1g4583 1273 ProSiteProfiles B30.2/SPRY domain profile. 76 270 IPR001870 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4583 K12169 - gmx:100800617 2320.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4583 1 59927316 59939462 Lja1g4583 1 59927316 59939462 ECH