Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4577 ATGGCGGATTCCGGTGAACCAAAGGAGGAGGAGAAGAACCAGAACCAGAACCTGATCCCGAACCTTCCAGATGACGTAGCAGTGAATTGCTTGGCTCGGGTCCCTCGTTCGGACCACCCGAACCTCTCCCTCGTTTCCAAACCAATCCACTTCCTCCTCACTTCGCCACTCTTCTTCAACGCGCGTTCCCTTCTCAACTGCACCCAACACCACCTTTACCTCACGCTCCGCACACGCGCCTCCGCGCTCCAAATCTTCACGCTCCACCGCAAAACCCTCCTCCCCCTCCCTCCTCTCCCCTCCCCCGCCCTCGGCTCCGCCTACGCCGTCCTCGGCCCCACTATCTACATCCTCGGCGGCTCCATCAACGACGTCCCCACACCTCACGTCTGGCTTCTCGACTGCCGCTTCCACCGCTGGCTCCCCGGCCCCTCCATGCGCGTCGCGCGTGAGTTCGCCGCTGCTGGCGTCATCGACGGCAAGATCTACGTCATCGGCGGGTGTATCGCCGACAACTGGACCCGCTCCGCTCACTGGGCGGAAACCCTCGACCCTGCCACCGGGCGGTGGGAGCGCGTCCCGAGCCCGCCTGAGATCCAGGAGAAGTGGATGCACGCTAGCGCGGTTGTCGGGGGTAAGGTTTATGCCATGGCTGATCGCGGCGGCGTCGCGTTCGACCCGCGGAGCGGCGCGTGGGAGAGCGTGAGTGGCGAGCTTGACCTTGGGTGGCGGGGGAGGGCGTGTGTGGTGGATGAGGTGCTGTACTGCTATGATTTCTTGGGGAAGATCAAGGGGTTTGATGTGAAGCGAGGGTGTTGGAGGGAGCTAAAGGGGTTGAACAGTTTGCCGATTTTTCTGTGTGGAGCAACCATGGCTGATGTTGGTGGAAAATTGGTTGTGGTTTGGGAGTACCAAGCGGTCAAGGGTGGTATTGGCAAAGAAATAGATATTTGGTGTGCTGAGATTGAGGTGAACAAGAAGCAGAATGGGGAATTGTGGGGTGGTGTTTGCTGGTTTGGCAAGGTTCTTTCTGTTCCAAAAGGGTCCTCCATTGTTCATTGTTCTTCTGTAGCTGTGTGA 1080 0.5926 MADSGEPKEEEKNQNQNLIPNLPDDVAVNCLARVPRSDHPNLSLVSKPIHFLLTSPLFFNARSLLNCTQHHLYLTLRTRASALQIFTLHRKTLLPLPPLPSPALGSAYAVLGPTIYILGGSINDVPTPHVWLLDCRFHRWLPGPSMRVAREFAAAGVIDGKIYVIGGCIADNWTRSAHWAETLDPATGRWERVPSPPEIQEKWMHASAVVGGKVYAMADRGGVAFDPRSGAWESVSGELDLGWRGRACVVDEVLYCYDFLGKIKGFDVKRGCWRELKGLNSLPIFLCGATMADVGGKLVVVWEYQAVKGGIGKEIDIWCAEIEVNKKQNGELWGGVCWFGKVLSVPKGSSIVHCSSVAV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4577 359 Gene3D - 65 331 IPR015915 GO:0005515
Lja1g4577 359 Pfam Kelch motif 150 197 IPR006652 GO:0005515
Lja1g4577 359 Pfam Kelch motif 105 147 IPR006652 GO:0005515
Lja1g4577 359 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 9 342 - -
Lja1g4577 359 Pfam F-box domain 20 53 IPR001810 GO:0005515
Lja1g4577 359 SUPERFAMILY F-box domain 11 94 IPR036047 GO:0005515
Lja1g4577 359 MobiDBLite consensus disorder prediction 1 21 - -
Lja1g4577 359 SMART kelc_smart 161 212 IPR006652 GO:0005515
Lja1g4577 359 SMART kelc_smart 114 160 IPR006652 GO:0005515
Lja1g4577 359 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP6 9 342 - -
Lja1g4577 359 SUPERFAMILY Kelch motif 82 342 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4577 Lja-Chr1 59888156 59890694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4577 22 343 Miscellaneous Gene Families AT4G33900 36.467 2.41e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4577 - - gmx:100798508 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4577 1 59888156 59890694 Lja1g4577 1 59888156 59890694 ECH