Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4574 ATGGCGACCGTGATGCAGAAGATCAAAGACATCGAAGATGAGATGGCAAAGACTCAAAAGAATAAGGCTACTGCTCATCATTTGGGTTTGCTCAAGGCTAAGCTTGCAAAGCTGCGGAGGGAACTCCTTACACCTACAACAAAAGGAGGTGGAGGTGCTGGTGAAGGTTTTGATGTTACCAAAAGTGGGGATTCAAGAGTTGGTCTGGTGGGCTTCCCTTCAGTTGGGAAATCCACTCTGCTGAATAAATTAACGGGGACGTTTTCAGAGGTTGCTTCGTATGAGTTTACTACCTTGACTTGCATCCCAGGTGTGATCACATATCGTGGAGCTAAAATTCAGTTGCTGGATCTCCCTGGAATTATTGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAGACAGGTTATTAGTACTGCAAGGACATGCAATTGCATTTTAATTGTTCTTGATGCAATAAAGCCAATAACACATAAGCGTCTTATAGAAAAAGAGCTGGAGGGATTTGGTATAAGGTTAAACAAGGAGCCACCAAATCTGACCTTTAGAAAGAAAGAGAAGGGTGGTATCAATTTCACATCAACTGCCGCCAATACTAATCTGGATCTTGATACTGTGAAGGCTATATGTAGTGAGTACAAAATTCACAACGCAGATATTACTCTTAGGTATGATGCCACCGCTGATGACCTTATAGATGTCATTGAGGGCAGTAGAGTATATATTCCTTGCATCTATGTTGTGAACAAGATTGATCAGATCACACTTGAGGAACTGGAGATCTTGGATAAGCTACCTCATTACTGTCCAATCAGTGCACATCTGGAGTGGAACCTTGATGGGCTTCTGGAGAAAATTTGGGAATATCTCAGTTTAACTCGTATTTATACTAAACCTAAAGGGATGAATCCTGACTATGAAGACCCTGTAATATTGTCGTCTAAGAAGAGGACAGTTGAAGACTTCTGTACTCGCATTCACAAGGACATGCTTAAACAGTTTAAGTATGCTCTGGTCTGGGGCTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGGAACATGAACTGGAAGATGAAGATGTTGTTCAGATTATCAAGAAAGTATAA 1107 0.4173 MATVMQKIKDIEDEMAKTQKNKATAHHLGLLKAKLAKLRRELLTPTTKGGGGAGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKEKGGINFTSTAANTNLDLDTVKAICSEYKIHNADITLRYDATADDLIDVIEGSRVYIPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNLDGLLEKIWEYLSLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFCTRIHKDMLKQFKYALVWGSSAKHKPQRVGKEHELEDEDVVQIIKKV* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4574 368 CDD DRG 65 297 IPR045001 GO:0003924|GO:0005525
Lja1g4574 368 Pfam TGS domain 293 366 IPR004095 -
Lja1g4574 368 Pfam C-terminal region of MMR_HSR1 domain 186 291 IPR031662 -
Lja1g4574 368 ProSitePatterns GTP1/OBG family signature. 117 130 IPR006074 GO:0005525
Lja1g4574 368 Coils Coil 1 21 - -
Lja1g4574 368 PANTHER - 1 367 IPR045001 GO:0003924|GO:0005525
Lja1g4574 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 305 IPR027417 -
Lja1g4574 368 Gene3D - 283 368 IPR012675 -
Lja1g4574 368 Gene3D - 129 239 - -
Lja1g4574 368 Gene3D - 1 86 - -
Lja1g4574 368 CDD TGS_DRG1 288 367 - -
Lja1g4574 368 TIGRFAM small_GTP: small GTP-binding protein domain 64 216 IPR005225 GO:0005525
Lja1g4574 368 ProSiteProfiles TGS domain profile. 290 366 IPR004095 -
Lja1g4574 368 SUPERFAMILY TGS-like 286 366 IPR012676 -
Lja1g4574 368 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 65 290 IPR031167 GO:0005525
Lja1g4574 368 PRINTS GTP1/OBG GTP-binding protein family signature 67 87 IPR006073 GO:0005525
Lja1g4574 368 PRINTS GTP1/OBG GTP-binding protein family signature 132 150 IPR006073 GO:0005525
Lja1g4574 368 PRINTS GTP1/OBG GTP-binding protein family signature 88 106 IPR006073 GO:0005525
Lja1g4574 368 PRINTS GTP1/OBG GTP-binding protein family signature 115 130 IPR006073 GO:0005525
Lja1g4574 368 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 1 1 367 - -
Lja1g4574 368 Pfam 50S ribosome-binding GTPase 66 158 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4574 Lja-Chr1 59870656 59878161 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4574 K06944 - han:110912002 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4574 1 59870656 59878161 Lja1g4574 1 59870656 59878161 ECH