Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4573 ATGGACCAAAGTAAGGAGAAAAATGCCCCTTGGCTATCAGTTCCACAGTTTGGGGACTGGGATCAGAAGGGTCCATTGCCAGATTACTCAATGGATTTCTCAAAAATCCGGGAAATGAGGAAGCAAAACAAGACAAACATTTCAAGGGCAAGTCTTGGCAATGAAGAGGAGCTCACAGCATCTACCACGAGCAGCAGTATAAACACTGGCCACACTGAGCCCCAGCAGCACTCTAACTACCACCAAGCTAACTCTCCCACTGTAAGATTTCTGATTCTTTTTTTTATTGGCTACTATTTAAAACTACTCAAGAATGGTATTAGAGAAAGTTTTGTTGTTCAAAGCTGA 348 0.4253 MDQSKEKNAPWLSVPQFGDWDQKGPLPDYSMDFSKIREMRKQNKTNISRASLGNEEELTASTTSSSINTGHTEPQQHSNYHQANSPTVRFLILFFIGYYLKLLKNGIRESFVVQS* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4573 115 MobiDBLite consensus disorder prediction 1 25 - -
Lja1g4573 115 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 94 - -
Lja1g4573 115 MobiDBLite consensus disorder prediction 45 81 - -
Lja1g4573 115 PANTHER PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN 1 94 - -
Lja1g4573 115 MobiDBLite consensus disorder prediction 40 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4573 Lja-Chr1 59868024 59870255 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4573 - - pvu:PHAVU_009G139200g 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4573 1 59868024 59870255 Lja1g4573 1 59868024 59870255 ECH