Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4568 ATGGCTTCAACCTCAACTACCACCTTCCCCATCTCCTACTCACAATCCCAGTCAAAGTTCCTCAATCCACTTCGACAGCCACGGATTCAATTTCACAGCCGCAACAAACACACATCAATTTCGCTTCAACCCGCCACAATCCGCCCCACCCTTCTGCCACTATGCACTTTTTCCGGCATACCCACTTCACGTTTCCGACCTCAAACGAGTTTACCCAAGTTCCTTTCACAAAAGATTGCATCTTTACTAATTGGGTCGTTCATCTTCTTCATGGGTTGTTGTCTCAGCAAAAACACTGCTTTTGCAGTAGCAGCAGTGCCTTCGGTAATGGAGGAGAAGATGGAAGCCATGGAAGGGAAAAGCGAGGAGGAGGAAATGTACGAGAAGCTTTTGGAGAAGGATTCCAGAAACGTTGAGGCTCTCAAGGTGATTGTGTATGGGAAAATCAGGAGAGGGAAGTGTAATGAGGCAGTGAAGTTTGTGGAGAGTTTGATTGATTTGGAGCCGAATGAGGTTGAGTGGAAGCTTTTGCTGGCACTCTGTTATGAGACAATGGGGGAGTTGAGTAAGGCTAAAACTTTGTTCAGGGAAATCCTGGAGAAAATGCCTCTTCAAGTCAGAGCTTTGCATGGTCTGGCTATGGTGATGCACAAAAACCATGAGGGTCCTGCTGTATTTGAAATGCTGAATAAGGCTCGAGAGTTAGCTTCTAATGAAAACAGAGTTACAGAGGAGAGAAATATAAGGATCTTAATTGCACAAATGCTTGTTGTACAGGGTAATTTGGAGGAGGGCTTAAAAAGATTTCAAGATTTGATTGATGAAAATTATCGAGATTTTCGGCCTTATTTTTGCCAGGGAATAATATACAGTCTCCTGGATCAAAAGGAGGAAGCAGCACGGCAGTTTGAAATATACCAAACTCTTGTGCCTGAAGAGTTTCCTCAGAGGGGATTTCTTGATGATATTGCCTTAACAGCACAAAGAACATCCCGAGAACAGTTTCAAAAGGAATTGGGAGATCAATTTTCTTACAGGAAGTCGTGA 1047 0.4374 MASTSTTTFPISYSQSQSKFLNPLRQPRIQFHSRNKHTSISLQPATIRPTLLPLCTFSGIPTSRFRPQTSLPKFLSQKIASLLIGSFIFFMGCCLSKNTAFAVAAVPSVMEEKMEAMEGKSEEEEMYEKLLEKDSRNVEALKVIVYGKIRRGKCNEAVKFVESLIDLEPNEVEWKLLLALCYETMGELSKAKTLFREILEKMPLQVRALHGLAMVMHKNHEGPAVFEMLNKARELASNENRVTEERNIRILIAQMLVVQGNLEEGLKRFQDLIDENYRDFRPYFCQGIIYSLLDQKEEAARQFEIYQTLVPEEFPQRGFLDDIALTAQRTSREQFQKELGDQFSYRKS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4568 348 Pfam Tetratricopeptide repeat 151 209 - -
Lja1g4568 348 Gene3D Tetratricopeptide repeat domain 113 334 IPR011990 GO:0005515
Lja1g4568 348 SUPERFAMILY TPR-like 124 312 IPR011990 GO:0005515
Lja1g4568 348 PANTHER OS05G0182100 PROTEIN 7 339 - -
Lja1g4568 348 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 7 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4568 Lja-Chr1 59795482 59802194 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4568 - - lja:Lj1g3v1221310.1 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4568 1 59795482 59802194 Lja1g4568 1 59795482 59802194 ECH