Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4538 ATGGCGACAAAAGCGTTATCCCTCTCTGTGACCCTCAGCGACCTCACCAACCATCGCTTCGGCTCCAAGTCGCCGTACCCACCTGCGAAAGCTTCCGTTTTCACTCTCAGATGCTCTGCTGGGAATGGAGATAGGCCTTGGAAAAACTCAGATGCTAGGCTTGTGCTGGAGGATGGTTCAATCTGGAAAGCTAAATCATTTGGTGCTATAGGGACCCAAGTTGGTGAAGTTGTTTTCAACACATCATTAACTGGGTATCAAGAGATTTTAACTGATCCTAGTTATGCTGGCCAGTTTGTGCTGATGACCAATCCGCATATCGGGAATACTGGCATCAATTTTGATGATGAGGAATCAAGACAGTGCTTCCTTTCTGGTCTAGTGATTAGAAGTTTGAGTATCAGTACCTCAAACTGGAGATGTGTGAAGGATTTGGGTGATTACTTAATTGAAAGGAACATCATGGGGATTTATGATGTTGATACTCGTGCAATCACGCGCAGATTACGGGAAGATGGTAGCCTTATTGGTGTCTTGAGCACTGACAATGCCAAAACAGATGAGGAACTACTTCAGATGTCTAAATCATGGGACATTGTTGGTGTTGATCTTATAAGTGGTGTATCTTGCAAGACTCCACATGAATGGGTTGATAACGCTAAGGAAGAATGGGAATTTAGCTCTAAAGGGCCTGGAGAGACTTTCCATGTAGTTGCTTATGATTTTGGAATCAAGCATAATATACTTAGGCGCCTAGCATCTTATGGCTGTAAAATCACTGTTGTGCCATCAACATGGCCAGCATCCGAAACTTTGAAGCTAAACCCAGATGGGGTCCTTTTCAGCAATGGCCCTGGAGATCCATCCGCCGTTCCTTATGCTGTTGAAACAGTAAAGAATATTATTGGAAAGGTGCCTGTTTTCGGAATTTGCATGGGCCATCAATTGCTAGGCCAGGCTTTAGGAGGCAAAACCTTCAAGATGAAATTTGGTCACCATGGAGGAAATCATCCAGTTCGTAACCTTCGACTTGGCCGTGTGGAAATTAGTTCTCAGAACCACAACTATGCGGTTGATCCTGCCACTCTGCCAGAAGGAGTAGAGGTTACTCATATCAATCTTAATGATGGAAGTTGTGCGGGTCTTGCATTCCCTGCTAAAAAAATCATGTCTCTTCAATACCACCCTGAAGCATCTCCTGGACCTCATGATTCTGACAACGCTTTTAGGGAGTTTGTGGAGCTAATGAAGCAAGAGAAAACCAAAACATCCAATCTACACCAACTACAAGCCTTGGATGTGTAG 1305 0.4421 MATKALSLSVTLSDLTNHRFGSKSPYPPAKASVFTLRCSAGNGDRPWKNSDARLVLEDGSIWKAKSFGAIGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPHIGNTGINFDDEESRQCFLSGLVIRSLSISTSNWRCVKDLGDYLIERNIMGIYDVDTRAITRRLREDGSLIGVLSTDNAKTDEELLQMSKSWDIVGVDLISGVSCKTPHEWVDNAKEEWEFSSKGPGETFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKLNPDGVLFSNGPGDPSAVPYAVETVKNIIGKVPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNLRLGRVEISSQNHNYAVDPATLPEGVEVTHINLNDGSCAGLAFPAKKIMSLQYHPEASPGPHDSDNAFREFVELMKQEKTKTSNLHQLQALDV* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4538 434 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 32 420 - -
Lja1g4538 434 SMART CPSase_sm_chain_2 50 180 IPR002474 -
Lja1g4538 434 PRINTS Anthranilate synthase component II signature 279 288 - -
Lja1g4538 434 PRINTS Anthranilate synthase component II signature 391 404 - -
Lja1g4538 434 PRINTS Anthranilate synthase component II signature 306 317 - -
Lja1g4538 434 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 236 422 - -
Lja1g4538 434 Gene3D - 50 198 IPR036480 -
Lja1g4538 434 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 276 290 - -
Lja1g4538 434 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 306 322 - -
Lja1g4538 434 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 323 340 - -
Lja1g4538 434 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 348 359 - -
Lja1g4538 434 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 237 251 - -
Lja1g4538 434 CDD GATase1_CPSase 237 413 IPR035686 -
Lja1g4538 434 Pfam Glutamine amidotransferase class-I 240 414 IPR017926 -
Lja1g4538 434 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 51 195 IPR036480 -
Lja1g4538 434 Hamap Carbamoyl-phosphate synthase small chain [carA]. 50 420 IPR006274 GO:0004088|GO:0006207|GO:0006541
Lja1g4538 434 Gene3D - 199 421 IPR029062 -
Lja1g4538 434 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 32 420 - -
Lja1g4538 434 SUPERFAMILY Class I glutamine amidotransferase-like 229 418 IPR029062 -
Lja1g4538 434 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 54 178 IPR002474 -
Lja1g4538 434 PRINTS Glutamine amidotransferase superfamily signature 279 288 - -
Lja1g4538 434 PRINTS Glutamine amidotransferase superfamily signature 306 317 - -
Lja1g4538 434 PRINTS Glutamine amidotransferase superfamily signature 391 404 - -
Lja1g4538 434 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 52 418 IPR006274 GO:0004088|GO:0006207|GO:0006541
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4538 Lja-Chr1 59280234 59283755 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4538 K01956 - gmx:100806168 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4538 1 59280234 59283755 Lja1g4538 1 59280234 59283755 ECH