Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4534 ATGTCATCCACACACTCTGAAGCGGCGAAGCTGGAACAAATCATCACCGAGTTCTTCGCCAAAAGCCTTCACATAATCCTCGAATCAAGGGCAATCTCCGCTTCATCGCGCAATTTCAGCACCGTTTCATCTCCCTCTTCGTCCTCATCATCATCTTCAAGCGTGAGGCCGAGGGATAAATGGTTCAATCTAGCGCTGAGGGACTGCCCCGCCGCGCTGGAGAACACTGAGCTATGGCGGCACGGGAACATGGACCCAATTGTGGTGGATGTGGTTCTGGTTCAGAGGGATCAAACCCTGAGTTTTTCTCCCAGAAGGGTTCTTCCCAGGAGTTCTTCTTTAAAGGAAAGGTACCCCTTTTGCTGGAACACTATGATGGATAGGGAAGAATTAGGGGTTGGGGTAGAGAGTGAGAGGGTTGTAGAGAGATGGGTTGTGCAGTATGAGAGCAGAAAACCCACTAGGGATTCTAATTCTGGTAGTAGAAGGTCAAGCAATACTTCCTTACATGCTTTGTATAAAAAATCAACTTTACTTTTGAGGTCTTTGTATGCTACTGTTAGGCTTTTGCCTGCATATAAGATCTTTAGGGAGCTCAATTCCAATGGGAAGATTTGTGCTTTCACCCTTGCTCACAGGGTTTCCACTTTTGTTGAGCCCTTCACTAGTAAAGAAGAGGCGAAAATGCTCAAGTTTGGGTTCACCCCTGTGGATACCTCTTCTGGAAGGCTATGCCTTTCAGTTATGTATTGTCCCTCGGTCTCGGATGTGAGCTCTGAGCCTTCGACTCCTATGTCCCCGCAAGTTATAACTGATTATGTTGGGAGTCCAATGGCTGATCCTTTGAGGAGGTATCCATCACTTCCTGTGGCAAGAGTGCCATTGCCCGGCACTCCGTCGTCATTGCCATCTTCAAGGCGGCATAGTTGGAGTTATGACCATTGTAGAGCATCATCTCCTTCGAATAATTGTTCCCCTTCACCCACATATTCAGAATCAAACACATCTGTTTCCCTTGCTAGTTTTCATTGCTATCCACCCAACAGTTTGCCTCCTCATCCTAGTGGAATGTCCTTGCTTCATAAGAAGAATACAAATTTCGACGATTATAACCCCTCACCAAGCTTCTCTCCCTCTCCCTCTCCCTCTCCATCACCTCCCATATACAATTTGGGATCATTAGCATCAAAAGCACTTTTACGCTCTGAAAGTGCTCCCGTCTGCATACCTAATACTAAAGATTCTGATTCCCCTGGATACACTGATAGGCGTAATTTGCCTCCATCCTCTCCGCGTAGAGGTTTGAGGAATGTGATACAAACATGCACAACAACTGAGAAGTTGTTTTCTCTTGGAAAAGATGAGTCTCAGAAGTATTCTGGAGCCAAGATAGTAGCTAACAGCTTACCGCAGATTTCATTTTCCAGGAGCTCTAGCAGGTCTTATCAGGATGATTTTGATGATACTGATTTTACTTGTCCTTTTGATGTGGATGATGATGATATAACAGATCCTGGTAGCAGAGCGGAATCTTTTGATCATGGTCAAATAGCTGAGGTGCTTGAAGCTGGAAAATTCCTTCCTATCAGAAAGTCCCAAGATGCTGCAGTTGGTGCACTTGTACATATGTTGAAGAAAGCGGCACCTCTGCATCAAGACTTCTCGACATCTGAACACTTGTCACCGGGCACACGTCCCGAAACCTTGAGCAATAACAGCATTCAAGAGCCCAATCAGGTTGTAGATGGGCTAAATCAAGCGAGCATCATGTCGACAATGAATAGGAAAACAACAGCTGATGCATTGGAAGAGTTCTACAGTTACAGAGAGATGAAAAACTTGTTACTTATGCGCGGCAGTAAGCAACAGATATAG 1875 0.4544 MSSTHSEAAKLEQIITEFFAKSLHIILESRAISASSRNFSTVSSPSSSSSSSSSVRPRDKWFNLALRDCPAALENTELWRHGNMDPIVVDVVLVQRDQTLSFSPRRVLPRSSSLKERYPFCWNTMMDREELGVGVESERVVERWVVQYESRKPTRDSNSGSRRSSNTSLHALYKKSTLLLRSLYATVRLLPAYKIFRELNSNGKICAFTLAHRVSTFVEPFTSKEEAKMLKFGFTPVDTSSGRLCLSVMYCPSVSDVSSEPSTPMSPQVITDYVGSPMADPLRRYPSLPVARVPLPGTPSSLPSSRRHSWSYDHCRASSPSNNCSPSPTYSESNTSVSLASFHCYPPNSLPPHPSGMSLLHKKNTNFDDYNPSPSFSPSPSPSPSPPIYNLGSLASKALLRSESAPVCIPNTKDSDSPGYTDRRNLPPSSPRRGLRNVIQTCTTTEKLFSLGKDESQKYSGAKIVANSLPQISFSRSSSRSYQDDFDDTDFTCPFDVDDDDITDPGSRAESFDHGQIAEVLEAGKFLPIRKSQDAAVGALVHMLKKAAPLHQDFSTSEHLSPGTRPETLSNNSIQEPNQVVDGLNQASIMSTMNRKTTADALEEFYSYREMKNLLLMRGSKQQI* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4534 624 Pfam Autophagy-related protein 13 15 250 IPR018731 GO:0006914|GO:1990316
Lja1g4534 624 Gene3D HORMA domain 1 256 IPR036570 -
Lja1g4534 624 MobiDBLite consensus disorder prediction 359 374 - -
Lja1g4534 624 MobiDBLite consensus disorder prediction 405 436 - -
Lja1g4534 624 MobiDBLite consensus disorder prediction 554 575 - -
Lja1g4534 624 PANTHER UNCHARACTERIZED 5 621 IPR040182 GO:0000045
Lja1g4534 624 MobiDBLite consensus disorder prediction 355 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4534 Lja-Chr1 59233138 59238264 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4534 K08331 - gmx:100798585 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4534 1 59233138 59238264 Lja1g4534 1 59233138 59238264 ECH