Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4522 ATGAGAGGAACAATGGGAACTTCTCCTCGTGCAGTGGAAGCTCGACACCGTTTGCCTGCATCCATTGAAGATTTATACAAACGAAGACAGCCAAGAAGTAAATTGAAAGATGTAGAGAAACCTTTCCACTTACCCATCCAAGATAGGAACTCAAAATGCAAGTTTCCTTTCTTGAAACTTATCCTTTTGATAACCATTTGCGGCACTTTTGTAATACTTCTTTACTCTCCAGAGGTTTACAATACCAACCATTTATCAACCTCTGGCTCTAGGTGGATATGGGGAGGCTTAGACCCTCGGTACATGACTAATGTGGATACTAACTGGGATGATATAGTGAAAGTCACACAGAACCTGATAGGGAAAAATGAATTTCAAGGGATTGGACTACTAAACTTCAATAACACTGAAATTGTCCATTGGGAGCATCATTTTCCTGATGCCACACATGTTGATCTGCCTCTGGAGCATGCTGCAAGAAATGTGACATGGGAGTCTCTGTACCCAGAATGGATTGATGAGGAAGAAGAAACTGAAGTTCCCGTTTGCCCTTCTCTACCGAGTCTCAGATCTCCGGGTGTTAGACTCAACCTCATTGCTGTCAAGCTTCCTTGTAGGGACCAGGGGAATTGGTCTAGAGACGTTGCTCGTTTGCACCTGCAGCTTGCAGCTGCTGGCCTTGCCACCTCTTTCAAAGGCAATTACCCTGTATATGTGCTCTTCATCACAAACTGCTTTCCAATACCAAATCTGTTTACCTGCAAAGAACTGGTTGGACATGAAGGGAATGCATGGTTATATAGACCAAACTTGAGTGTTATGGGAGAGAAAGTCCAGCTTCCAGTAGGATCTTGTGAACTTGCCCTTCCTATGAGAGGCAAACAGCTGGTTTACAATGGAAATCCTCCAAGAGAAGCCTATGCAACAATTCTGCACTCAGCTCATGTTTATGTTTGTGGAGCTATAGCTGCTGCACAAAGCATTCGCCTCTCTGGATCGACTAGAGACCTGGTAATACTTGTTGATGAGACAATCAGCGGGTATCACAGAAGCGGTTTGGAAGCAGCAGGGTGGAAGGTTAGAACAATTCAGAGGATCAGAAACCCAAAAGCTGAAAAAGATGCTTACAATGAATGGAACTACAGCAAATTCCGGTTATGGCAGCTGACAGATTATGACAAGATAATATTCATTGATGCAGATTTGCTCATACTAAGAAACATAGACTTTCTCTTCGGAATGCCAGAAATCACTGCTACTGGTAATGATGCTACTCTTTTTAACTCGGGTGTCATGTTGATAGAGCCATCAAATTGCACATTCCAGCTCCTGATGGATCATATTAATGAGATTGAGTCCTACAATGGAGGGGACCAGGGATACCTGAATGAAATATTTACATGGTGGCACAGGATACCAAGACACATGAACTTCTTGAAGCATTTCTGGATTGGTGACGAGGAAGAGAAGAAGCAAATGAAAACCAGGCTGTTTGGTGCCGAGCCTCCAGTTCTTTATGTCCTTCACTATCTTGGTATGAAGCCATGGTTATGCTTCCGGGACTACGATTGTAACTGGAATGCTGACATATTTCATGAGTTTGCAAGTGATGTTGCACATGCAAAGTGGTGGAAGGTGCACGATACAATGCCTGAGCTTTTGCAGCAGTTCTGCCTATTGAAGTCAAAGCAGAAGGCACAGTTGGAGTGGGATCGCCGGCAGGCTGAAATAGCAAACTACACAGATGGGCATTGGCGAATCAAAGTTAAGGATCGCCGCTTGAAGAAATGCATAGATAATTTATGCAACTGGAAAAGCATGTTGCGGCACTGGGGAGAGACGAATTGGACAGATGATGAGTCTTTTACTCCATCACCACCCGCCATCACCACATCGTCTCTACCTGCTTTATGA 1914 0.4394 MRGTMGTSPRAVEARHRLPASIEDLYKRRQPRSKLKDVEKPFHLPIQDRNSKCKFPFLKLILLITICGTFVILLYSPEVYNTNHLSTSGSRWIWGGLDPRYMTNVDTNWDDIVKVTQNLIGKNEFQGIGLLNFNNTEIVHWEHHFPDATHVDLPLEHAARNVTWESLYPEWIDEEEETEVPVCPSLPSLRSPGVRLNLIAVKLPCRDQGNWSRDVARLHLQLAAAGLATSFKGNYPVYVLFITNCFPIPNLFTCKELVGHEGNAWLYRPNLSVMGEKVQLPVGSCELALPMRGKQLVYNGNPPREAYATILHSAHVYVCGAIAAAQSIRLSGSTRDLVILVDETISGYHRSGLEAAGWKVRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFGMPEITATGNDATLFNSGVMLIEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWIGDEEEKKQMKTRLFGAEPPVLYVLHYLGMKPWLCFRDYDCNWNADIFHEFASDVAHAKWWKVHDTMPELLQQFCLLKSKQKAQLEWDRRQAEIANYTDGHWRIKVKDRRLKKCIDNLCNWKSMLRHWGETNWTDDESFTPSPPAITTSSLPAL* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4522 637 Pfam Glycosyl transferase family 8 311 517 IPR002495 GO:0016757
Lja1g4522 637 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 1 20 614 - -
Lja1g4522 637 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 303 552 IPR029044 -
Lja1g4522 637 MobiDBLite consensus disorder prediction 618 637 - -
Lja1g4522 637 CDD GT8_Glycogenin 305 550 - -
Lja1g4522 637 PANTHER GLYCOGENIN SUBFAMILY MEMBER 20 614 - -
Lja1g4522 637 SUPERFAMILY Nucleotide-diphospho-sugar transferases 304 550 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4522 Lja-Chr1 58949268 58955436 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4522 13 636 Glycosyltransferase AT3G18660 66.770 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4522 K20890 - gmx:100809361 1217.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4522 1 58949268 58955436 Lja1g4522 1 58949268 58955436 ECH