Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4516 ATGATGAATTCTCAACTTGCAAACACCATCGATTTCATTCAACTCCCTAAACCCTTGTTCCCTCCTAAACCCCTCTTCCCCCAATTTCTCCATTCTCCACCTCGCTCCACTCGTCTTCTCCGAACTAGATTCCGACACAAGGCTCAATGCAAACTCACAGCTACTGCTTCCACTTCTACTTCTGTTTCTCCCAGCGAAGAAGAACAAGAACAAGAGGACGATGAGTCTGTTCAGCTTTTCGAGAAACTGAAGGAGGCTGAGAGGAAGCGGGTAAATGAGTTGGAGGAACTTGACAAGAAGGCTAATGTGCAGTTGGAGAGGCAGCTTGTGATGGCTTCCTCATGGAGTAGGGCTTTGTTGACCTTGCGCGGAAAACTGAAGGGAAGTGAATGGGATCCTGAAAATTCACACAGGATTCACTTCAGTGATTTTTTGAAACTTCTTGACTCAAATAATGTCCAATTTATGGAGTACTCTAATTATGGTCAAACAATATCAGTCATTTTACCATATTACAAAAATGGGAAACCATCAGGCACTGAAGGGAATCCTAAGGATATTATTTTTCGGCGTCATCCGGTTGATCGAATGCCAATTGATTCTTGGAATGATGTATGGAGAAAGCTACATCAGCAAATTGTAAACGTTGATGTCATTAATGTGGATGCTGTACCTGCTGAAGTATACTCATCTGTTGCAACTGCAGTCATATGGTCTATGCGTCTTGCCCTTGCTGTTGGATTTTATGTGTGGATTGATAATTTGATGAGACCGATATATGCAAAGTTGATACCTTGTGATCAGGGTCCTCCAAGCCCACCAACTAAGCAGCCAGTCTTAAGTCGTTCACTTGGATCTCTAGGCAAGAGTCGGGCTAAATTTATATCTGCTGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGCCAGGAATACATAAAGCGGGAACTACAAGAGATTGTCCGAATTTTAAAGAATGAAGACGAGTTTCAAGACACAGGAATTTATTGTCCTAAAGGGGTACTTCTTCATGGGCCTCCTGGAACTGGTAAAACTTTACTGGCTAAAGCCATTGCAGGTGAAGCAGGGTTACCTTTTTTTGCAGCTAGTGGCACAGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCGTCCCGTGTTAAAGACCTTTTTGGGAGTGCAAGATCATTTGCACCTTCTATAATCTTTATTGATGAGATAGATGCCATTGGTAGCAAGCGTGGAGGACCTGATATTGGTGGAGGAGGTGCTGAAAGGGAACAAGGATTACTTCAGATACTGACTGAGATGGATGGATTCAAAGTTTCTACAGCACAGGTGCTCGTGATAGGTGCTACAAATAGATTGGATATTCTTGATCCTGCTCTATTGAGGAAGGGTCGTTTTGACAAGATTATCAGAGTTGGTTTGCCATCAAAAGATGGAAGATTTGCCATTTTGAAGGTGCATGCTAGGAATAAATTTTTTCGCTCAGAGGAGGAAAAAGAGATTCTACTTAAGGAAATTGCTGAGCTTACAGAAGATTTTACTGGGGCCGAGCTGCAAAATATACTGAATGAAGCTGGAATTTTGACAGCCAGGAAGGATTTGGACTACATTGGGAGAGATGAGCTGCTTGAGGCATTAAAGAGGCAAAAGGGAACATTTGAAACGGGGCAAGAGGATAGTACAGAAATTCCTGAAGAATTGAAACTGAGATTGGCATACAGAGAAGCAGCTGTTGCTGTTCTTGCATGTTATTTTCCTGAACCCCACCGCCCTTTTGTTGAGACTGATATAAATTCTATCCGCAGCCAGCCAAATATGCGTTATACTGAAATTTCTGGTCAGGTTTTTGCAAGGAAATCAGATTACGTAAACTCTATAGTTCGTGCTTGTGCTCCTAGAGTAATCGAGGAGGAGATGTTCGGGATTGACAACTTGTGTTGGATATCTGCAAAGGCAACATTAGAAGCTTCAAGGCGTGCTGAATTTTTAATTCTGCAGACAGGAATGACTGCATTTGGGAAAGCCTTTTACAAAAACCAAAGTGATCTTGTGCCTAATCTTGCAATGAAGCTTGAAGCACTCCGAGATGAGTATATGCGTTATGCTACAGGGAAGTGTTCATCTGTACTAAACGAGTACCATTCAGCAGTAGAGACAATCACAGATATTTTGCTTGAAAAGGGGCACATTAAAGCTGATGAGATCTGGGACATTTATAAAAGTGCTCCTCGTGTCGCGCAGCCTTCTGTGAGTCCAGTGGATGAGTATGGAGCACTGATTTATGCTGGACGATGGGGAATCCATGGTATCAGTCTTCCTGGAAGAGTTACATTTAGACCAGGCAATGCTGGATTTTCAACATTTGGTGCACCACGCCCTACAGAGACACAAATTGTTAGTGATGAAACTTGGAAACTAATAGATGATATCTGGGATAAAAAGGTTCAAGATATGAAGGATGAAGCATCAAAGGAGATTGAAGAAGAGAAAGATAAACCACAACTTTTGATGGCCAGCCATTTCCTTTGA 2538 0.4216 MMNSQLANTIDFIQLPKPLFPPKPLFPQFLHSPPRSTRLLRTRFRHKAQCKLTATASTSTSVSPSEEEQEQEDDESVQLFEKLKEAERKRVNELEELDKKANVQLERQLVMASSWSRALLTLRGKLKGSEWDPENSHRIHFSDFLKLLDSNNVQFMEYSNYGQTISVILPYYKNGKPSGTEGNPKDIIFRRHPVDRMPIDSWNDVWRKLHQQIVNVDVINVDAVPAEVYSSVATAVIWSMRLALAVGFYVWIDNLMRPIYAKLIPCDQGPPSPPTKQPVLSRSLGSLGKSRAKFISAEERTGVTFDDFAGQEYIKRELQEIVRILKNEDEFQDTGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAASGTDFVEMFVGVAASRVKDLFGSARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRFAILKVHARNKFFRSEEEKEILLKEIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDSTEIPEELKLRLAYREAAVAVLACYFPEPHRPFVETDINSIRSQPNMRYTEISGQVFARKSDYVNSIVRACAPRVIEEEMFGIDNLCWISAKATLEASRRAEFLILQTGMTAFGKAFYKNQSDLVPNLAMKLEALRDEYMRYATGKCSSVLNEYHSAVETITDILLEKGHIKADEIWDIYKSAPRVAQPSVSPVDEYGALIYAGRWGIHGISLPGRVTFRPGNAGFSTFGAPRPTETQIVSDETWKLIDDIWDKKVQDMKDEASKEIEEEKDKPQLLMASHFL* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4516 845 Gene3D - 478 558 - -
Lja1g4516 845 Coils Coil 495 522 - -
Lja1g4516 845 Gene3D - 286 476 IPR027417 -
Lja1g4516 845 Coils Coil 69 104 - -
Lja1g4516 845 SUPERFAMILY FtsH protease domain-like 567 747 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Lja1g4516 845 PANTHER METALLOPROTEASE M41 FTSH 40 814 - -
Lja1g4516 845 Pfam ATPase family associated with various cellular activities (AAA) 342 476 IPR003959 GO:0005524|GO:0016887
Lja1g4516 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 551 IPR027417 -
Lja1g4516 845 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 40 814 - -
Lja1g4516 845 Pfam AAA+ lid domain 506 546 IPR041569 -
Lja1g4516 845 Coils Coil 815 835 - -
Lja1g4516 845 ProSitePatterns AAA-protein family signature. 447 465 IPR003960 GO:0005524|GO:0016887
Lja1g4516 845 CDD AAA 309 477 - -
Lja1g4516 845 SMART AAA_5 338 479 IPR003593 -
Lja1g4516 845 MobiDBLite consensus disorder prediction 52 75 - -
Lja1g4516 845 Gene3D Peptidase M41 560 747 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4516 Lja-Chr1 58833710 58843638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4516 202 553 Miscellaneous Gene Families AT3G02450 40.563 1.89e-68 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4516 - - gmx:100804743 1445.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4516 1 58833710 58843638 Lja1g4516 1 58833710 58843638 ECH