Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4504 ATGAATCTCCCTTCTCTCATTCGCTTCCCTGAGCGTCTTCTTGCTCCTCGTTGCTCAACACTTCCCACTAACACTATCAGGAGCAATAGCGTGGAGAATGTTGCAATTGTTGGCCGTAATCTGAATTTTTCCTTCACGGCAAGGCAAACAAATGATGTGCGAGTTCTCAGGGATTGTTCACTTCGCATTCCTTCTGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCAACCCTCTTGAAGATTTTGGCTGGTCTCTTGGCTCCAACTTCAGGAACAGTGTATGTGAATGAGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGGTGGTGATGCCCACAGTAGATGCTGATGTTGCATTTGGTCTTGGTAAATTCAACTTGCCCAATGATGAGGTCAGATCTAAGGTGCAACGAGCTTTGCATGCTGTTGGCCTGTCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGCGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTAGCAGAAGCTTGCAAAGTTCTATTGTTGGATGAGCTAACCACATTCTTAGACGAAACTGACCAGGTTGGGGTTATCAAAGCTGTTAGGAACACTTTGGACACCTCTGCAGATGTCACAGCATTATGGGTCACCCATCGTTTGGAAGAACTAGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTGGTCAAGCATGGAGATGCGACAAGCATAAGGAGTTTCATTGAAGCCAGGCAATCCGCTTATATAAACCAGATTAATTCCTAA 798 0.4574 MNLPSLIRFPERLLAPRCSTLPTNTIRSNSVENVAIVGRNLNFSFTARQTNDVRVLRDCSLRIPSGQFWMLLGPNGCGKSTLLKILAGLLAPTSGTVYVNEPKSFVFQNPDHQVVMPTVDADVAFGLGKFNLPNDEVRSKVQRALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRNTLDTSADVTALWVTHRLEELEYADGAIYMEDGKVVKHGDATSIRSFIEARQSAYINQINS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4504 265 SMART AAA_5 65 238 IPR003593 -
Lja1g4504 265 CDD ABC_cobalt_CbiO_domain1 39 238 IPR015856 GO:0005524|GO:0016020|GO:0055085
Lja1g4504 265 Pfam ABC transporter 56 188 IPR003439 GO:0005524
Lja1g4504 265 Gene3D - 31 264 IPR027417 -
Lja1g4504 265 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 27 264 - -
Lja1g4504 265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 253 IPR027417 -
Lja1g4504 265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 38 261 IPR003439 GO:0005524
Lja1g4504 265 ProSitePatterns ABC transporters family signature. 161 175 IPR017871 GO:0005524
Lja1g4504 265 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 27 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4504 Lja-Chr1 58623367 58626825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4504 39 248 Calmodulin-binding Proteins AT2G36910 29.825 2.85e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4504 - - gmx:100813654 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4504 1 58623367 58626825 Lja1g4504 1 58623367 58626825 ECH