Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4499 ATGAAGATGAAATCTCACTCTTCCAATTTCTTCACGTTCTTCCTTGTAGCCTTTACCATCATACATGTTTGCTTAGCAGATTGTGACAATCTACAGGACAGTTGCATTGCAGATTCACCCGGAAACCAATTCATCAATGGCCTCCCCTGCAAGAATCCAACTAACACAAGTGCTCATAATTTCAAATCCACAGAATTAAGCAAATCTGGTTCCAGAGACAAATTTGGCGCATCAATCAACATTGTAACTGCTTCCAATTTCCCTGGCCTTAACACTCTTGGCCTCTCAATTGGCAGAATTGACATTCAAGTGGATGGGATTGTGAACCTCCACAACCATCCAAGAGCTACTGAGATGATCTTTGTGAAGGAAGGTGTGGTTGCCGCGGCGTTTCTCGATACTCAGAACAAGCTCTTCCAGAAGCTTCTTAAGGCAGGGGATGTGTTTGTGGTCCCCAAGGGGTTGTTCCATTTTCTCCTGAACCGTGGTGTGGAGGTTGCTACTGTCGTGTCTGTGTTCAATGGCCAGAATCCTGGGTTTGAAACTCTCATGGGAACAACACCTTCTGATGATACCACGTTGGAATCAGTTGAGAAGGTGAAGAGGAAGCTCATTGCAGTTTCTGATTTAGAACTTCATGGTGTTAATGATTCAACTTTGGCAATGTTGGAGATCATTTATAGTTAG 687 0.4367 MKMKSHSSNFFTFFLVAFTIIHVCLADCDNLQDSCIADSPGNQFINGLPCKNPTNTSAHNFKSTELSKSGSRDKFGASINIVTASNFPGLNTLGLSIGRIDIQVDGIVNLHNHPRATEMIFVKEGVVAAAFLDTQNKLFQKLLKAGDVFVVPKGLFHFLLNRGVEVATVVSVFNGQNPGFETLMGTTPSDDTTLESVEKVKRKLIAVSDLELHGVNDSTLAMLEIIYS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4499 228 CDD cupin_OxOx 27 204 - -
Lja1g4499 228 PRINTS Germin signature 141 161 IPR001929 GO:0030145
Lja1g4499 228 PRINTS Germin signature 174 189 IPR001929 GO:0030145
Lja1g4499 228 PRINTS Germin signature 111 131 IPR001929 GO:0030145
Lja1g4499 228 Pfam Cupin 75 185 IPR006045 -
Lja1g4499 228 SMART Cupin_1_3 69 201 IPR006045 -
Lja1g4499 228 Gene3D Jelly Rolls 26 212 IPR014710 -
Lja1g4499 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 213 - -
Lja1g4499 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 14 213 - -
Lja1g4499 228 SUPERFAMILY RmlC-like cupins 30 186 IPR011051 -
Lja1g4499 228 ProSitePatterns Germin family signature. 106 119 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4499 Lja-Chr1 58604178 58604995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4499 10 204 Miscellaneous Gene Families AT3G05930 38.095 7.20e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4499 - - mtr:MTR_3g096330 301.982