Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4497 ATGGAATCTGACAAAGTAACCCTCGCTCCTCTCATCCTAGGAACCTGTACCAGACCCTCATGGGCGGTGCTCTTCCTCCTCTTCACCGTCGTCACCATCCTCTCCCTCCAGCTTTCCACGTGGTCCGTTTTACCGGTCTGGACGCTCTCCGGTTCGGTCGGACCGGAGCCATCCCCGCCGGATCAGACCACCTGCTCCGGTTTCTTCCACGACGTTCCACGGCGGAAGGTGGTCGCGTCGATCGAGGATTTCGGCGGCGTTGGCGACGGGAAGACCTCGAACACGGAGGCGTTTCGGAGGGCGATTCGGTTCATGCAGCGCTTCCGTGATCGAGGTGGGTCCCAGCTGAATATCCCCAACGGAAAGTGGCTCACCGGTAGTTTTAACCTCACCAGTGATTTCACGCTTTTTCTACAACAGGGTGCTGTTATTTTGGCTTCTCAGGACCCAGAAGAATGGCCTATAATTGAACCATTGCCATCTTATGGAAGAGGCAGAGAAAGGTTAGGTGGAAGACATATTAGCCTTATACATGGAAATGGAGTCCGCAATGTTATCATCACAGGACAAAATGGGACAGTTGATGGTCAAGGGAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCACACAAGGGGCCACCTCCTTGAACTAATGTACTCTGACAATGTTCTTGTCTCCAACCTCACCTTTCGAAATTCTCCATTTTGGACCATCCATCCTGTTTACTGCAGTAATGTTGTGATCAAAGGAATGACAATCTTGGCTCCTCTCAATGCTCCAAACACTGATGGCATAGACCCAGACTCAAGCACCAACGTATGCATTGAAGATAACTACATAGAAAGTGGAGATGATCTAGTAGCCATCAAGAGTGGTTGGGATCACTATGGAATCACCATGGCCCGTCCAAGCACCAACATCATAGTGCGGAGAGTTTCGGGCACCACCCCAACTTGTTCTGGAGTAGGAATAGGCAGCGAGATGTCTGGTGGAATTGCAAACATTACAATTGAGAATTTGCACGTGTGGGATTCTGCAGCTGGTGTTCGCATAAAATCTGATAAAGGCAGAGGGGGCTATATAACAAATGTTAGTATAAGTGATATAAGAATGGAGAGAGTGAAGATACCTATTAGGTTCAGTAGAGGTTCAAACGACCACCCTGATGATGGGTGGGATCCAAAAGCTGTTCCAAGATTCAAGGACATTTTAATCAGTAATATAATTTGTGTGAATTCAACAAAAGCCCCAGTTTTGGAAGGCGTAGAGGGCTCATCATTTGAAGGCTTGTGTTTCAGAAATATTTCTCTTATTGGTGTTGCCTCATCTTCAACATGGCATTGTGAACATGTCTCTGGTTTTGCCACTGATGTGTTACCTGTGCCATGTTCTGAGTTGAAGAACAATGCCAACTCATCTTGGTGTTCACCTTCCTGA 1446 0.4786 MESDKVTLAPLILGTCTRPSWAVLFLLFTVVTILSLQLSTWSVLPVWTLSGSVGPEPSPPDQTTCSGFFHDVPRRKVVASIEDFGGVGDGKTSNTEAFRRAIRFMQRFRDRGGSQLNIPNGKWLTGSFNLTSDFTLFLQQGAVILASQDPEEWPIIEPLPSYGRGRERLGGRHISLIHGNGVRNVIITGQNGTVDGQGKMWWELWWNRTLEHTRGHLLELMYSDNVLVSNLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDHYGITMARPSTNIIVRRVSGTTPTCSGVGIGSEMSGGIANITIENLHVWDSAAGVRIKSDKGRGGYITNVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILISNIICVNSTKAPVLEGVEGSSFEGLCFRNISLIGVASSSTWHCEHVSGFATDVLPVPCSELKNNANSSWCSPS* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4497 481 Gene3D - 70 461 IPR012334 -
Lja1g4497 481 SMART pbh1 246 272 IPR006626 -
Lja1g4497 481 SMART pbh1 335 356 IPR006626 -
Lja1g4497 481 SMART pbh1 307 329 IPR006626 -
Lja1g4497 481 SMART pbh1 273 305 IPR006626 -
Lja1g4497 481 PANTHER PECTIN LYASE-RELATED 13 479 - -
Lja1g4497 481 Pfam Glycosyl hydrolases family 28 174 455 IPR000743 GO:0004650|GO:0005975
Lja1g4497 481 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 13 479 - -
Lja1g4497 481 SUPERFAMILY Pectin lyase-like 73 470 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4497 Lja-Chr1 58586726 58591049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4497 12 475 Glycoside Hydrolase AT4G33440 67.742 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4497 - - gmx:100814190 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4497 1 58586726 58591049 Lja1g4497 1 58586726 58591049 ECH