Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4493 ATGATGAGGAAATCCACCACCACCTTCCTCGCCCGTTTCAAATCAAAGATAAACTACTCTCCTTCTCTTCCTCCACGCTTCTTCAGTTCTCCGAATCAACCTGACCCAAATCGCAATGCGTTGTTGACCCTTCTCCCTTCACGCCGTTTTGCCTCCACTACTGCGCAAAATCCCATGGTTGATGATTCCAATCAGAATCAGGCCATAGATTTTCCTGGTGGAACGGTGAAATTCACCCCTGAAATGAGGTTTATACCTGAATCAACTCTTGAGAGAACACCCTGCTACCGCGTCCTTGATGACAATGGGCAGCCAATTTCGGGAACTAATTTTGCACAGGTCAGCAAGGAAGTTGCTGTCAAGATGTATAATGACATGGTGACACTCCAAACTATGGACACTATATTTTATGAAGCACAAAGGCAAGGTAGAATATCATTTTATGTAACAACCGTTGGAGAAGAGGCTATCAATATTGCATCAGCTGCAGCTCTTACCATGGATGATGTTATTTTCCCTCAGTACAGGGAACAAGGAGTTTTGTTATGGCGCGGTTTTACTCTGCAAGAATTTGCAAACCAGTGTTTCTCCAATAAATATGATAATGGGAAAGGAAGGCAGATGCCAGCCCATTATGGGTCCAACAAGCACAATTACATTACTGTGGCATCAACAGTTGCCTCTCAAATTCCCCATGCTGTTGGAGCTGCATATTCCTTAAAGATGGACAAAAAGAATGCATGCGCTGTCACTTACTTTGGAGATGGTGGCTCAAGTGAGGGAGATTTCCATGCTGGGTTAAATTTTGCAGCTGTTATGGAGGCCCCGGTTATTTTTTTATGCCGGAATAATGGATGGGCTATTAGCACCCCAACGTCAGATCAATTTCGAAGTGATGGTATTGTCGTGAAAGGACAAGCGTATGGAGTTCGTAGCATCCGCGTAGATGGCAATGATGCCTTGGCCATTTATAGCGCTGTTCAAGCTGCTCGTCAAATGGCAATTAGTGAAGAGAGACCAGTTCTAATAGAAGCTCTTACTTATAGAGTTGGACACCACTCCACATCGGATGATTCAACCAAGTATCGTCCAGCCAGTGAGATTGAATGGTGGAGACAGGCACGCGATCCTGTGGCTAAATTTAGAAAGTGGATAGAAAGGAATGGTTGGTGGAATGCTGTGGCTGAGTCAGAGCTTAGAAACAGTTTGAGACAGCAGCTTCTGCATACAATTCAGGTAGCGGAGAGTGTAGAAAAACCTCCGCTTGGGGACATTTTTAGTGATGTTTATGATGTCCCTCCATCCAATCTCCGTGAGCAGGAGCAATGGCTGAAGGAGACTGTAAAAAATCATCCAAAAGAGTACCCAGCAAATATTTCTGTGTAG 1386 0.4452 MMRKSTTTFLARFKSKINYSPSLPPRFFSSPNQPDPNRNALLTLLPSRRFASTTAQNPMVDDSNQNQAIDFPGGTVKFTPEMRFIPESTLERTPCYRVLDDNGQPISGTNFAQVSKEVAVKMYNDMVTLQTMDTIFYEAQRQGRISFYVTTVGEEAINIASAAALTMDDVIFPQYREQGVLLWRGFTLQEFANQCFSNKYDNGKGRQMPAHYGSNKHNYITVASTVASQIPHAVGAAYSLKMDKKNACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFLCRNNGWAISTPTSDQFRSDGIVVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAISEERPVLIEALTYRVGHHSTSDDSTKYRPASEIEWWRQARDPVAKFRKWIERNGWWNAVAESELRNSLRQQLLHTIQVAESVEKPPLGDIFSDVYDVPPSNLREQEQWLKETVKNHPKEYPANISV* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4493 461 Pfam Dehydrogenase E1 component 126 420 IPR001017 GO:0016624
Lja1g4493 461 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 47 460 - -
Lja1g4493 461 CDD TPP_E1_PDC_ADC_BCADC 122 414 - -
Lja1g4493 461 Gene3D - 63 460 - -
Lja1g4493 461 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 47 460 - -
Lja1g4493 461 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 91 456 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4493 Lja-Chr1 58489047 58492921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4493 63 299 Acyl Lipid Metabolism Gene Families AT5G09300 78.903 1.41e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4493 K00166 - gmx:100779198 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4493 1 58489047 58492921 Lja1g4493 1 58489047 58492921 ECH