Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4488 ATGGCGATAGGGAAATATTCTAGAGTGGATGGCAGAAGATCATCAGGTTACTGTTCGACGGTGACTGTTGTCGCGTTTGTGGCTCTATGTTTGGTGGGAGTCTGGATGATGACATCGTCTTCTGTAGTTCCTGAGAAAAGCGGGGATGTGTCTCAGGAGAGTAATAACGAGGTGAAAGAACAGACTGAGGTTAAAGAACAAGTTAGCGAGACTGATAATAGCAGCAGTAGGCAGTTTGAAGATAATCCTGGTGATTTGCCTGAGGATGCAACCAAGGAGGACAGCAATGTCTCCTCGGAAGATAGCTCTAACTTGCCAGAAAAGCAAGAAGAGAAATTGCAGGAAAACTCTGTAGATAATTCTTCTGAAGATGCAAATACAGAAGAAGCAGATAAGAAAAAAGAGGATGAAGGTTCCAAGACAGAGAATCTTGAATCAAACGCAGATACTACAGATAGTAACAAAGAAGATAGTGGTGATACTTCCAGTAAGGAGTCTGATTCTGATGAGAGTGAAAAGAAAAATGAATCAGATGATGACAAGAAGTCTGATTCAGATGAAAATGAAAAGAAAACTGATAACTCTGATGAAACAACAGATACTAGGATAGAGGAGAAGGTGGAACAAAGTGATAACAAGGAATCTGATGGAAGCTCTAGCGAGAAGAGTACAAATGAGGTATACCCTTCCGGGGCTCAGTCAGAGCTTCTTAGTGAAAGTACAACACAAACTGGGTCTTTTTCAACTCAGGCTGCAGAGTCAAAGCATGAAAAGGAGGCTCACGAATCCTCCAAGCAGTACAAGTGGAAACTTTGCAATGTCACCGCTGGCCCTGACTTTATCCCATGCCTTGACAACTGGAAAGCGGTTAGGAGTCTTCGGAGTACTAAACACTATGAACATCGAGAAAGGCACTGTCCTGAAGAACCCCCTACCTGCCTTGTCAGTCTTCCTGAAGGATATAAACGCCCAGTTGAATGGCCGAAGAGCAGAGATAAGATATGGTATTACAATGTTCCTCACACTAAGCTTGCTGAAGTTAAGGGACACCAAAACTGGGTTAAAGTTACGGGGGAGTACCTTACTTTTCCTGGTGGCGGAACCCAATTCAAGCATGGTGCACTTCATTACATTGACTTTATACAAGAGTCTGTACCTGACATTGCTTGGGGAAAGCGCACACGTGTTATATTAGATGTTGGATGTGGTGTTGCTAGCTTTGGAGGTTTTCTCTTTGAAAGAGACGTACTTGCAATGTCACTCGCACCAAAGGATGAACATGAAGCTCAGGTTCAATTTGCTCTTGAAAGGGGTATTCCTGCTATATCTGCTGTGATGGGCACAAAGAGGCTTCCCTTCCCTGGGAGAGTATTTGATGCAGTCCATTGTGCAAGATGTAGAGTTCCATGGCATGTAGAAGGTGGTAAATTACTTCTGGAGCTGAATAGAGTATTGCGACCTGGGGGTTTTTTTGTGTGGTCTGCCACTCCTGTTTATCAGAAGCTTCCTGAAGATGTTGAAATATGGAATGCCATGAAAGCACTAACAAAAGCGTTATGCTGGGAACTTGTGTCGATCAACAAGGATCAACTTAATGGAGTTGGTGTAGCTGTATACAAGAAGCCACTTTCTAATGAGTGTTATGAGAAACGATCAAAGAATGAGCCTCCGCTCTGTGGGGACTCTGATGATCCTGATGCTGCATGGAATGTTAAATTGCAAGCTTGTATGCACAAAGTGCCAAGCAGTTCAAGCGAAAGGGGCTCAAAATTGCCAGGGCAGTGGCCGGCCAGACTGACCAAAGTGCCATACTGGTTGTCGAGTTCCCAAGTTGGAGTTTATGGAAAGCCTGCCCCTGAAGATTTCACTGACGATTATGAACACTGGAAACGTGTAGTGTCCAAGTCTTACCTAAACGGCATCGGAATTCAGTGGTCAAATGTGCGGAATGTCATGGATATGAAATCTGTCTATGGAGGATTTGCTGCAGCTTTGAGAGATTTGAATATCTGGGTAATGAATGTAGTTTCAATAGACTCCCCAGATACCCTTCCCATTATTTATGAACGAGGTCTTTTTGGTATATATCATGATTGGTGCGAATCATTTAGCACCTATCCTAGGTCGTATGATCTCCTCCATGCAGATCATCTGTTCTCGAAGGTTAAGAAAAGGTGCAGTTTAGCTTCTCTAGTCGCTGAAGTTGATCGGATTCTCAGGCCTGAAGGTAAGCTTATTGTCCGTGACACAGTTGAGATCATCGACGAGCTTGAGAGCATGGTAAAGTCTATGAAGTGGGAGGTTCGCATGACTTACTCCAAGGATAACGAGGGCATGCTATGTGTCCAGAAGTCCAAGTGGCGCCCTAAGGAGGTGGAAACACTCAAGTATGCTATTCTTTAA 2403 0.4386 MAIGKYSRVDGRRSSGYCSTVTVVAFVALCLVGVWMMTSSSVVPEKSGDVSQESNNEVKEQTEVKEQVSETDNSSSRQFEDNPGDLPEDATKEDSNVSSEDSSNLPEKQEEKLQENSVDNSSEDANTEEADKKKEDEGSKTENLESNADTTDSNKEDSGDTSSKESDSDESEKKNESDDDKKSDSDENEKKTDNSDETTDTRIEEKVEQSDNKESDGSSSEKSTNEVYPSGAQSELLSESTTQTGSFSTQAAESKHEKEAHESSKQYKWKLCNVTAGPDFIPCLDNWKAVRSLRSTKHYEHRERHCPEEPPTCLVSLPEGYKRPVEWPKSRDKIWYYNVPHTKLAEVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQESVPDIAWGKRTRVILDVGCGVASFGGFLFERDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGRVFDAVHCARCRVPWHVEGGKLLLELNRVLRPGGFFVWSATPVYQKLPEDVEIWNAMKALTKALCWELVSINKDQLNGVGVAVYKKPLSNECYEKRSKNEPPLCGDSDDPDAAWNVKLQACMHKVPSSSSERGSKLPGQWPARLTKVPYWLSSSQVGVYGKPAPEDFTDDYEHWKRVVSKSYLNGIGIQWSNVRNVMDMKSVYGGFAAALRDLNIWVMNVVSIDSPDTLPIIYERGLFGIYHDWCESFSTYPRSYDLLHADHLFSKVKKRCSLASLVAEVDRILRPEGKLIVRDTVEIIDELESMVKSMKWEVRMTYSKDNEGMLCVQKSKWRPKEVETLKYAIL* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4488 800 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 624 780 IPR029063 -
Lja1g4488 800 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 279 784 IPR004159 GO:0008168
Lja1g4488 800 MobiDBLite consensus disorder prediction 44 262 - -
Lja1g4488 800 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 5 71 IPR004159 GO:0008168
Lja1g4488 800 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 192 797 IPR004159 GO:0008168
Lja1g4488 800 MobiDBLite consensus disorder prediction 104 118 - -
Lja1g4488 800 MobiDBLite consensus disorder prediction 221 251 - -
Lja1g4488 800 MobiDBLite consensus disorder prediction 52 67 - -
Lja1g4488 800 CDD AdoMet_MTases 397 492 - -
Lja1g4488 800 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 302 546 IPR029063 -
Lja1g4488 800 MobiDBLite consensus disorder prediction 125 220 - -
Lja1g4488 800 PANTHER PMT26-LIKE PROTEIN, PUTATIVE-RELATED 192 797 - -
Lja1g4488 800 PANTHER PMT26-LIKE PROTEIN, PUTATIVE-RELATED 5 71 - -
Lja1g4488 800 MobiDBLite consensus disorder prediction 82 96 - -
Lja1g4488 800 Gene3D Vaccinia Virus protein VP39 368 564 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4488 Lja-Chr1 58451568 58456616 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4488 - - gmx:100777586 1311.59