Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4486 ATGGAATTAAGCACTTCCACTCTAGTACTTTACCCTGCATCCCAACCTGAGGAACCCAAAGATGAGAATGAGGCTTTTGTTTTTGACTCAAATTTGCTGCAAAAGCAGGTCATGCCCAAAGAGTTCTTTTGGCCATGTGGTGACATGGTTAACACCACCCAAGAGGAGCTCAAGGAACCCCTCATAGACTTAAGTGTCATGAAAAAAGGTGATGAAAAAGCTATTGCTTCTGCTGCAGAGCTTGTTAGAAAAGCCTGCATGAAGCATGGCTTCTTCCAAGTGATCAACCATGGTGTTGATCAAGATCTCATTCATGCTGCTTATCATGAAACTGACTCCATTTTCAAGCTCCCCATCAGCAAGAAGCTCAGTGCTAAGAGGGAACCTGGTGGGGTCTCTGGCTACTCAGGTGCTCATGCAGATCGCTACTCTTCCAAATTGCCATGGAAAGAGACATTTTCTTTCCTATACAATCATCAAAACAACTCCAAGTCCCAAATTCCTGATTACTTCATGTCTGTCTTAGGAGAAGACCTTCAACACACAGGGACGGTGTATCAGAAGTACTGTGAAGCAATGAAGGAACTTTCTTTAGTAATTATGGAGCTTTTGGCCATTAGTTTGGGGGTGGATCGTTTGCATTATCGAAGATTTTTCCATGATGGTGAGTCAATAATGAGGTGCAACTATTATCCTCCTTGCAACAGTTCCAACCTCACCCTTGGAACTGGCCCTCACTCAGACCCGACATCACTAACCATTCTTCATCAAGACCAAGTTGGAGGTCTAGAAGTTTTTGCAGATCACAAATGGATGGCTGTTCGACCTCGACCTCAAGCCTTGGTCATAAACATTGGTGACACTTTCATGGCATTGTCAAATGGAAGATACAAGAGTTGTCTCCACAGGGCATTGGTTAACACATACCTGGAGAGGAGGTCATTGGTTTTCTTTGTGTCCCCAAGAGAAGACAAGGTGGTGAGACCCCCAGAGAGTCTGTTAAGCAGAAATGAGCCAAGGAAGTACCCTGATTTCACATGGTCCAAATTGTTCGAATTCACACAAAAGCACTACAGGGCTGATGTTACTACTCTCCAAAGCTTCATTCAATGGCATTGCTCTTCCAAGCCATCCAATTTCTAG 1143 0.4409 MELSTSTLVLYPASQPEEPKDENEAFVFDSNLLQKQVMPKEFFWPCGDMVNTTQEELKEPLIDLSVMKKGDEKAIASAAELVRKACMKHGFFQVINHGVDQDLIHAAYHETDSIFKLPISKKLSAKREPGGVSGYSGAHADRYSSKLPWKETFSFLYNHQNNSKSQIPDYFMSVLGEDLQHTGTVYQKYCEAMKELSLVIMELLAISLGVDRLHYRRFFHDGESIMRCNYYPPCNSSNLTLGTGPHSDPTSLTILHQDQVGGLEVFADHKWMAVRPRPQALVINIGDTFMALSNGRYKSCLHRALVNTYLERRSLVFFVSPREDKVVRPPESLLSRNEPRKYPDFTWSKLFEFTQKHYRADVTTLQSFIQWHCSSKPSNF* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4486 380 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 23 375 - -
Lja1g4486 380 SUPERFAMILY Clavaminate synthase-like 36 360 - -
Lja1g4486 380 Gene3D - 28 353 IPR027443 -
Lja1g4486 380 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 23 375 - -
Lja1g4486 380 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 221 321 IPR005123 -
Lja1g4486 380 Pfam non-haem dioxygenase in morphine synthesis N-terminal 60 164 IPR026992 -
Lja1g4486 380 Pfam 2OG-Fe(II) oxygenase superfamily 223 320 IPR044861 -
Lja1g4486 380 PRINTS Isopenicillin N synthase signature 82 99 - -
Lja1g4486 380 PRINTS Isopenicillin N synthase signature 309 327 - -
Lja1g4486 380 PRINTS Isopenicillin N synthase signature 246 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4486 Lja-Chr1 58430843 58433795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4486 56 359 Glycosyltransferase AT5G59530 30.841 3.45e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4486 K05282 - gmx:100816834 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4486 1 58430843 58433795 Lja1g4486 1 58430843 58433795 ECH