Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4481 ATGGGGATCAACGTCCTCAACGTGGCGGAGAAGCCCTCGGTGGCGAAATCGGTGGCCACCATACTCTCACAGAACCAGGGTCTACGAGTCAGGAATGGCCATTCCCGCTACAACAAGATCTTCGAGTTCAACTACAACATCCGCGGCCAACCCTGCCACATGCTCTTCACCTCCGTCACTGGCCACCTCATGGAGCTCGAATTCGAAGAGCGTTACCGCAAATGGCACTCTTGTGACCCCGCCGATCTCTTCCAAGCCGAAGTCCGTAAAACCGTTCCCGAGGACAAGAAGGATATCAAGAGGACATTGGAGGAGGAAGCTAGGCGGTGTCAGTGGCTTGTTTTGTGGCTCGATTGCGATCGAGAGGGTGAGAACATTGCGTTTGAAGTGGTCGACGTATGTAGGCCGGTGAATCCTCGCCTCACGATCAAGAGGGCTCGGTTTTCTGCACTGATTGAGAGGGATATCCATGAAGCTGTGCAGAATCTTGTTGAGCCGAATAAGTTTTTTGCGGATGCTGTTGATGCTAGGCAAGAAATAGATCTTCGTATAGGGGCCTCTTTCACCAGATTCCAGACCATGTTGTTGAAAGATGCTTTTGTCATTGACAATGCTGGAGATGGCAGAAATCTTGTCTTGAGTTACGGCCCTTGCCAGTTCCCTACACTTGGATTTGTTGTGGAAAGATATTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGACAATCAACTGCTCTCATAGGTCAGATGAAGGCCTTGCTAATTTCAGCTGGATGCGGGGCCATGTGTTTGATTATACTTGTGCAGTTATAATCTATGAGATGTGCATTGAGGGACAAACTGCAACTGTCTCGAATGTTAGACACCAAGAAAAGCTGAAGTATCCTCCACATCCTCTAAATACTATTGAGCTTGAGAAACGAGCTTCACGATACTTCCGGATGAGCTCTGAACACACAATGAAGGTGGCAGAAGAACTTTACCAAACTGGTTTCATCAGTTATCCTCGTACAGAAACTGATAGCTTTTCTCCAAGGACTAATTTGCATGCAATTGTGCAAGAACAACAAGGGCATCCTGAATGGGGAATATATGCACAGCGGTTGTTGGACCCTGAGGCGGGACTTTGGAGAAACCCTAGAGGTGGCGGACATGATGACAAGGCTCATCCACCCATCCACCCCACAAAATTTTCTGCCGGGGAATCAGGATGGAGCCAAAATCACCGCAAACTATATGAGCTGGTTGTTCGCCACTTCCTGGCATGTGTCTCAAAGCCTGCAGTTGGAGCTGAAACCACGGTAGAAATTGACATTGCTGGTGAACTATTTTCTGCTTGTGGCAGGGTGATTCTAGAGAAAAACTACTTGGATGTTTATCCCTTTGAAACTTGGGGTGGATCATTGATTCCAACATATACTGTTGGTCAACAGTTCACTCCAACAGCATTGACCCTTGATTCAGGAGTAACCAGACCACCACCACTTCTGAGTGAAGCTGATCTGCTGAGTTGTATGGACAAGGAAGGTATTGGTACAGATGCCACCATGCACGATCACATAAAGAAGCTGCTTGATCGGTTTTATGCAACTAAAGATGCTAGCACTCGATTCACACCAACTAATCTTGGTGAGGCACTTGTCATGGGATACGATGACATTGAAATGGCGTATAAACTATGGAAACCAGAACTTAGATCTGCTATGGAAAGTGACATGAAATCCGTTAGTGAAGGGACTAAAGGCAAAGATGCAGTTCTGGCAACTAGCTTGGATAAGATGAAAGCTTGTTTCTTACATGCAAGATTGAATAAAGTGAAACTTTTAGAGGCCATGTCAATATTTTTCCAAAGATCAAATAGATCTGCCGGTGATGAGCTGCATGCAACTGGAGAAGTTGTTAGACGATGTGGACTCTGCCAAGAATCAGACATGGTGCTAAAGAAAAATCGAGATGGCAATTTTATGGTCGGATGCTTGGGTTTCCCTCAGTGTAGGAATGCCGTTTGGCTCCCTGGATCAGTATCAGAAGCAGCTGTGACCACCAATCCTTGCAACTTCTGCACTCCTGGTCCTGTTTACCGGATTCAGTTGAAGTTTCGGCAGCTGGAAATACCACCAAACTACAATATCAACCATTTGGGTTGCATTGGTGGCTGTGATGAGATTCTCAGACAGTTGACTGAAATATGTGGCACTGGCCCTCGCATGCCAGCAAGAGCTCGGGGACCCACTGCATCAACCAGCAGCAACGTCAACCATAATAACCCAAGGCAAACAGTTTGTATGAACTGTCAAGAAACAGGGCATGCTTCTAATGATTGTCCTTCATTGACTTTACGCTCCAGGAATGCCCAACATCCTAGAATGAACCAACAAAGTGGGGAAACTTCTGTTTCATGCAGTTCGTGTGGAACACCATGTGCTTTGCGTACTGCAAATACAGCAAATAATAGGGGAAGGAAGTTCTACTCATGTCCATCACAGGAGTGCAACTTTTTTGTATGGGAGGATAGCCTCAACAACGGAACTGGAGGAAGAAGTTTTTCACGTTCAAATAATATTCCACCTTCCAACTCTAACCGAAATAGCGGCCGTGGATCTCGTGGCAGAGGTAGACAGAATGCGTCCAACTCTTCTAATGGGACTTTTGTGTCAGCCACCGGGGATCCTGTTTCTGGTAGAAGGTGCTTTGTGTGTGGTGATCCATCTCACTTTGCTAATGTCTGCCCCAATCGTGGAGCCTGA 2751 0.466 MGINVLNVAEKPSVAKSVATILSQNQGLRVRNGHSRYNKIFEFNYNIRGQPCHMLFTSVTGHLMELEFEERYRKWHSCDPADLFQAEVRKTVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCRPVNPRLTIKRARFSALIERDIHEAVQNLVEPNKFFADAVDARQEIDLRIGASFTRFQTMLLKDAFVIDNAGDGRNLVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWTINCSHRSDEGLANFSWMRGHVFDYTCAVIIYEMCIEGQTATVSNVRHQEKLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQTGFISYPRTETDSFSPRTNLHAIVQEQQGHPEWGIYAQRLLDPEAGLWRNPRGGGHDDKAHPPIHPTKFSAGESGWSQNHRKLYELVVRHFLACVSKPAVGAETTVEIDIAGELFSACGRVILEKNYLDVYPFETWGGSLIPTYTVGQQFTPTALTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDASTRFTPTNLGEALVMGYDDIEMAYKLWKPELRSAMESDMKSVSEGTKGKDAVLATSLDKMKACFLHARLNKVKLLEAMSIFFQRSNRSAGDELHATGEVVRRCGLCQESDMVLKKNRDGNFMVGCLGFPQCRNAVWLPGSVSEAAVTTNPCNFCTPGPVYRIQLKFRQLEIPPNYNINHLGCIGGCDEILRQLTEICGTGPRMPARARGPTASTSSNVNHNNPRQTVCMNCQETGHASNDCPSLTLRSRNAQHPRMNQQSGETSVSCSSCGTPCALRTANTANNRGRKFYSCPSQECNFFVWEDSLNNGTGGRSFSRSNNIPPSNSNRNSGRGSRGRGRQNASNSSNGTFVSATGDPVSGRRCFVCGDPSHFANVCPNRGA* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4481 916 Gene3D Topoisomerase I, domain 3 237 495 IPR013825 -
Lja1g4481 916 CDD TOPRIM_TopoIA_TopoIII 4 163 IPR034144 -
Lja1g4481 916 Pfam Toprim domain 6 150 IPR006171 -
Lja1g4481 916 SMART c2hcfinal6 762 778 IPR001878 GO:0003676|GO:0008270
Lja1g4481 916 SMART c2hcfinal6 897 913 IPR001878 GO:0003676|GO:0008270
Lja1g4481 916 SUPERFAMILY Retrovirus zinc finger-like domains 752 779 IPR036875 GO:0003676|GO:0008270
Lja1g4481 916 Pfam GRF zinc finger 801 840 IPR010666 GO:0008270
Lja1g4481 916 Gene3D Topoisomerase I, domain 4 297 427 IPR013826 -
Lja1g4481 916 ProSiteProfiles Toprim domain profile. 4 149 IPR006171 -
Lja1g4481 916 Gene3D Bacterial Topoisomerase I, domain 1 626 673 - -
Lja1g4481 916 Gene3D Topoisomerase I, domain 2 173 599 IPR013824 -
Lja1g4481 916 MobiDBLite consensus disorder prediction 846 888 - -
Lja1g4481 916 SMART toprim5 4 139 IPR006171 -
Lja1g4481 916 Pfam DNA topoisomerase 168 588 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja1g4481 916 Pfam Zinc knuckle 762 778 IPR001878 GO:0003676|GO:0008270
Lja1g4481 916 Gene3D - 2 166 - -
Lja1g4481 916 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 326 340 IPR023406 GO:0003917
Lja1g4481 916 CDD TOP1Ac 170 599 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja1g4481 916 PANTHER PROKARYOTIC DNA TOPOISOMERASE 4 698 IPR000380 GO:0003677|GO:0003917|GO:0006265
Lja1g4481 916 SMART topIban2 142 243 IPR003601 GO:0003677|GO:0003916|GO:0006265
Lja1g4481 916 SUPERFAMILY Retrovirus zinc finger-like domains 887 914 IPR036875 GO:0003676|GO:0008270
Lja1g4481 916 SMART topIaneu2 289 549 IPR003602 GO:0003677|GO:0003916|GO:0006265
Lja1g4481 916 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 597 IPR023405 -
Lja1g4481 916 ProSiteProfiles Zinc finger CCHC-type profile. 896 913 IPR001878 GO:0003676|GO:0008270
Lja1g4481 916 ProSiteProfiles Zinc finger CCHC-type profile. 763 778 IPR001878 GO:0003676|GO:0008270
Lja1g4481 916 PRINTS Prokaryotic DNA topoisomerase I signature 213 231 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja1g4481 916 PRINTS Prokaryotic DNA topoisomerase I signature 413 429 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja1g4481 916 PRINTS Prokaryotic DNA topoisomerase I signature 511 525 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja1g4481 916 PRINTS Prokaryotic DNA topoisomerase I signature 113 126 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja1g4481 916 PRINTS Prokaryotic DNA topoisomerase I signature 331 340 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lja1g4481 916 PANTHER DNA TOPOISOMERASE 3-ALPHA 4 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4481 Lja-Chr1 58288282 58310702 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4481 K03165 - gmx:100818971 1506.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4481 1 58288282 58310702 Lja1g4481 1 58288282 58310702 ECH