Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4431 ATGTGGCGCCGGAGCTATCTCCGATTGTCGGAACTCCACCGCGGAGCTTCACGTTTAGGGTTAGGGTTTCCGACACGATCGTCCTCGACTCAGCCGGGGAAGCGGTTCGCGGCGCTGTGGGGCAACGGTGATCACGGCAGGTTGGGCCTCGGCAGCTTGGAATCTCAATGGAGGCCCGCCGTTTGCTCCGCCTTCCTCAACCACTCTCCTCAAGCCATTGCTTGCGGCGGTGCTCACACGCTCTTCTTAACAGACAATGGATGCGTTTACGCTGCTGGTCTCAATGATTGTGGACAGCTTGGTACATCGGAGAGTGTGAACTACTCTCTGGAGCCACTTCAAGTTTTAGGACATGAGAAGAATATTGTGCATATTTCAGCTGGTTATAATCATTCTTGTGCGGTAACAGTGGATGGAGAACTATATATGTGGGGAAAGAATACTAATGGGCAGCTTGGACTCGGAAAAAGAGCTCCAAACATAGTTCATTTGCCAACTAAAGTGGAATACTTGGATGGAATCACCATTAAAATGGCTGCTTTGGGTGCTGAGCACTCATTGGTTATTAGTGATGGTGGAGAAGCCTTCAGTTGGGGCATGGGAGTGTCTGGTAGACTTGGTCATGGTCATGAGTCGAGCTTACTAGGATTCTTCAAAACTTACAGTGAGTACACCCCGAGGCTTATAAGAGATCTTGAGGGAATCAAGGTAAAATATGTAGCTGCTGGGATGCTAAGTTCGGCTTGTACTGATGAAAATGGTTCTGTTTTTATATTCGGAGAAAGAGGGATTGACAAGTTGTGTATGAAGGAGACGAGCGATGCAACAAAACCATCCTTGATTAGTAAACTTCCATACTCGGAAGAAGTTTCTTGTGGTGGCTATCACACCTGTGTCTTGACAAATTCCGGTGAGCTTTATACTTGGGGTTCAAATGAAAATGGCTGTCTTGGTATAGGTTCACCAGAAGCCATTCATCTACCTGAAAAGGTGCAAGGTCCTTTCATGAAATCTTCTGTTAGCCAGGTTTCTTGTGGTTGGAAACATACAGCAGCCATTTCTGAAGGGAGAGTTTTCACATGGGGTTGGGGAGGTTCCAATGGGACTTTCTCTGTAGATGGACATTCCTCAGGTGGACAACTGGGACATGGATCTGATGTGGACTACATATGTCCTGCAAGAGTTTGTTTTGGAGAAGACGTGAATGCATTGCAAGTTTCATGTGGCTTCAATCATACAGGTGCTATACTTGAATATACATAG 1263 0.4671 MWRRSYLRLSELHRGASRLGLGFPTRSSSTQPGKRFAALWGNGDHGRLGLGSLESQWRPAVCSAFLNHSPQAIACGGAHTLFLTDNGCVYAAGLNDCGQLGTSESVNYSLEPLQVLGHEKNIVHISAGYNHSCAVTVDGELYMWGKNTNGQLGLGKRAPNIVHLPTKVEYLDGITIKMAALGAEHSLVISDGGEAFSWGMGVSGRLGHGHESSLLGFFKTYSEYTPRLIRDLEGIKVKYVAAGMLSSACTDENGSVFIFGERGIDKLCMKETSDATKPSLISKLPYSEEVSCGGYHTCVLTNSGELYTWGSNENGCLGIGSPEAIHLPEKVQGPFMKSSVSQVSCGWKHTAAISEGRVFTWGWGGSNGTFSVDGHSSGGQLGHGSDVDYICPARVCFGEDVNALQVSCGFNHTGAILEYT* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4431 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 356 419 IPR000408 -
Lja1g4431 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 303 IPR000408 -
Lja1g4431 420 Gene3D - 31 160 IPR009091 -
Lja1g4431 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 356 IPR000408 -
Lja1g4431 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 139 192 IPR000408 -
Lja1g4431 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 86 IPR000408 -
Lja1g4431 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 87 138 IPR000408 -
Lja1g4431 420 SUPERFAMILY RCC1/BLIP-II 39 366 IPR009091 -
Lja1g4431 420 PRINTS Chromosome condensation regulator RCC1 signature 139 155 IPR000408 -
Lja1g4431 420 PRINTS Chromosome condensation regulator RCC1 signature 179 195 IPR000408 -
Lja1g4431 420 PRINTS Chromosome condensation regulator RCC1 signature 195 209 IPR000408 -
Lja1g4431 420 PRINTS Chromosome condensation regulator RCC1 signature 293 311 IPR000408 -
Lja1g4431 420 PRINTS Chromosome condensation regulator RCC1 signature 351 372 IPR000408 -
Lja1g4431 420 PRINTS Chromosome condensation regulator RCC1 signature 89 105 IPR000408 -
Lja1g4431 420 PRINTS Chromosome condensation regulator RCC1 signature 70 83 IPR000408 -
Lja1g4431 420 PRINTS Chromosome condensation regulator RCC1 signature 36 52 IPR000408 -
Lja1g4431 420 PANTHER OS11G0545800 PROTEIN 32 419 - -
Lja1g4431 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 193 253 IPR000408 -
Lja1g4431 420 Pfam Regulator of chromosome condensation (RCC1) repeat 193 243 IPR000408 -
Lja1g4431 420 Pfam Regulator of chromosome condensation (RCC1) repeat 138 189 IPR000408 -
Lja1g4431 420 Pfam Regulator of chromosome condensation (RCC1) repeat 40 83 IPR000408 -
Lja1g4431 420 Pfam Regulator of chromosome condensation (RCC1) repeat 303 353 IPR000408 -
Lja1g4431 420 Pfam Regulator of chromosome condensation (RCC1) repeat 374 416 IPR000408 -
Lja1g4431 420 Pfam Regulator of chromosome condensation (RCC1) repeat 86 135 IPR000408 -
Lja1g4431 420 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 32 419 - -
Lja1g4431 420 Gene3D - 161 419 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4431 Lja-Chr1 57517707 57524560 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4431 - - vun:114196144 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4431 1 57517707 57524560 Lja1g4431 1 57517707 57524560 ECH