Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4414 ATGCATTCCTTTCGCAGCAGCAACAGCAAGATCAGCAACAATGAATCCACGGCTGTGGTACAACGTTCCCTCTCAAACTGCAGCCGCCCCTCCTCCTCCACCCGCCGTGTTGTACAACGCTCCGCCTCCGCCTCCGCCAGGTTCACTCGCCAGAACACTGAGGTCATGCTCAATGACATCGTAGGAAATGGGATCTCCGGCATCCTCTACAAATGGGTCAACTACGGCCGTGGATGGCGCCCCCGCTGGTTCGTCCTCCATGACGGTGTCCTCTCTTATTATAAGATCCATGGCCCTGATAAGCTCGTCCTCAACCGCGACGTCGAGTCGCTGTCGAAAGTCATCGGTGAAGAGTCCCTCCGCCGCATCTCCAGCCACCGCCATTCTCCCTCCCGCAACCGCCGCAAACCTGTCAGCGAAATCCACCTCATGGTGTGTTCGGTACGAGAGAACAAGTCAGATGAGAGGAGGTTTTCAATATGCACCGGAACCAAGAAGAGGCTGCATTTGAGAGCAGAAAGCAGAGAAGACAGAGCAACATGGATGGAGGCAATGGTGGCAGTGAAGAACATGTACCCTCGACTTCCCAGCACAGAGGTCATGTCCCCCACCATGTCCACGGTGGTTTCCACCGACAAGTTGAGGCAGCGCCTCTTGCAGGAGGGTGTGAGTGAAGCTGCTATTCGTGAAAGTGAAGACATCATGAGGTCTGAATTCTCTGAGTTGCAAAAGCATGTTGTGGCTCTCAAATACAAGCAGTCTCTACTTATTGACACACTGCGACATCTAGAGACGGAGAAGGTTGACTTGGAGAACACACTTGTTGAAGATCAAAGGCATTCAAGGGATGAAGGGGATCCCTATCTATCAACTCATGAAAAGTACAGTGATGGAAGTGGCAGTGATTACTCTGATGAGCAGGACAGGCATGATCCCTCTGATGATGACCGCGATGCATTCTTTGACACACTTGAAATTTTCTCAACAAGTTCAGTTAGAAGTAATGGATCAGACCAATGTGAAGAGAAAAGTCCAACTGGAAAACATGACCCAATGTCGCCCATAGGATCTGTTGGATTCAACTATCCTTACATCCAGCGAAGAATGAAGTTGCCTGATCCGGCTGAGAAAGAGAGTGCAGTCAGTCTATGGTCAATAATCAAAGATAATATTGGGAAGGATCTTACAAAAGTTTGTCTCCCAGTTTACTTCAATGAACCCCTCTCCTCATTGCAGAAATGTTTTGAAGATCTAGAGTACTCTTACCTCCTAGACCAAGCATGTGAATGGGGTAAAATGGGTGACAGTTTGATGAGGATGCTACATGTGGCTGCATTTGCAGTTTCAGGGTATGCCTGCACTAGTGGTAGAAGTTGCAAACCATTTAATCCACTGTTGGGTGAGACATATGAGGCAGATTGTCCAGACAAAGGCCTTCAATTTATCTCTGAGAAGGTCAGTCATCACCCCATGATTGTTGCATGTCATTGTGAGGGCCGTGGCTGGAAATTTTGGGGTGACAGCAATTTAAAGAGCAAATTTTGGGGTCGATCGATTCAGGTTGATCCTGTTGGAGTATTGACTTTGGAATTTGATGATGGGGAAGTGTTCCATTGGAGCAAGGTAACCACATCCATTTACAACCTCATTTTAGGAAAACTCTACTGTGACCATTATGGTACAATGAGAGTAGAGGGGAACCGTGAGTATACATGTAAGATCAAATTCAAGGAGCAATCCATCATTGATAGAAACCCCCACCAGGTTCATGGCATAGTAGAAGATAAGAAAGGTAAAACGGTGGCAACTATATTTGGAAAGTGGGATGAGAGTTTGCATTACGTAATTGGAGGGCATTCAGGGAAAGGATCCAATGTGTCAGCAAAACCACAACTTTTGTGGAAGAGGAGCCCTGTACCAGAGTACCAGACAAGATACAACCTCACACAGTTTGCTACTACACTGAATGAAATCACACCTGGACTAAAGGAGAAGCTGCCACCAACAGATTCCAGGCTGAGGCCTGATCAAAGATGTTTGGAGAATGGAGAATATGAAATGGCCAATTCTGAGAAGTTGCGGTTGGAACAAAGACAGCGGCAGGCACGGAAGATGCAAGAGAAGGGTTGGCAACCAAGGTGGTTTGCTAAGGAAAAAGGCAGCAACACTTACCGCTATGTTGGTGGATACTGGGAGGCAAGGGAAAAGGGGAGCTGGGAATCTTGTCCTGACATTTTTGGCCAATTCTCAGCTGATCCTGATTCGACCCCAACTCCATAA 2280 0.4754 MHSFRSSNSKISNNESTAVVQRSLSNCSRPSSSTRRVVQRSASASARFTRQNTEVMLNDIVGNGISGILYKWVNYGRGWRPRWFVLHDGVLSYYKIHGPDKLVLNRDVESLSKVIGEESLRRISSHRHSPSRNRRKPVSEIHLMVCSVRENKSDERRFSICTGTKKRLHLRAESREDRATWMEAMVAVKNMYPRLPSTEVMSPTMSTVVSTDKLRQRLLQEGVSEAAIRESEDIMRSEFSELQKHVVALKYKQSLLIDTLRHLETEKVDLENTLVEDQRHSRDEGDPYLSTHEKYSDGSGSDYSDEQDRHDPSDDDRDAFFDTLEIFSTSSVRSNGSDQCEEKSPTGKHDPMSPIGSVGFNYPYIQRRMKLPDPAEKESAVSLWSIIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDQACEWGKMGDSLMRMLHVAAFAVSGYACTSGRSCKPFNPLLGETYEADCPDKGLQFISEKVSHHPMIVACHCEGRGWKFWGDSNLKSKFWGRSIQVDPVGVLTLEFDDGEVFHWSKVTTSIYNLILGKLYCDHYGTMRVEGNREYTCKIKFKEQSIIDRNPHQVHGIVEDKKGKTVATIFGKWDESLHYVIGGHSGKGSNVSAKPQLLWKRSPVPEYQTRYNLTQFATTLNEITPGLKEKLPPTDSRLRPDQRCLENGEYEMANSEKLRLEQRQRQARKMQEKGWQPRWFAKEKGSNTYRYVGGYWEAREKGSWESCPDIFGQFSADPDSTPTP* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4414 759 ProSiteProfiles PH domain profile. 62 190 IPR001849 -
Lja1g4414 759 SMART PH_update 63 192 IPR001849 -
Lja1g4414 759 MobiDBLite consensus disorder prediction 331 353 - -
Lja1g4414 759 MobiDBLite consensus disorder prediction 22 44 - -
Lja1g4414 759 Gene3D - 677 740 - -
Lja1g4414 759 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 10 751 - -
Lja1g4414 759 Coils Coil 685 708 - -
Lja1g4414 759 Pfam Oxysterol-binding protein 382 735 IPR000648 GO:0008289
Lja1g4414 759 Coils Coil 260 280 - -
Lja1g4414 759 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 10 751 IPR000648 GO:0008289
Lja1g4414 759 MobiDBLite consensus disorder prediction 298 316 - -
Lja1g4414 759 Gene3D - 63 192 IPR011993 -
Lja1g4414 759 Pfam Pleckstrin homology domain 70 185 - -
Lja1g4414 759 Gene3D - 468 644 - -
Lja1g4414 759 MobiDBLite consensus disorder prediction 274 291 - -
Lja1g4414 759 SUPERFAMILY PH domain-like 65 203 - -
Lja1g4414 759 SUPERFAMILY Oxysterol-binding protein-like 377 748 IPR037239 -
Lja1g4414 759 MobiDBLite consensus disorder prediction 274 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4414 Lja-Chr1 57269585 57276483 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4414 K20456 - gmx:100781218 1173.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4414 1 57269585 57276483 Lja1g4414 1 57269585 57276483 ECH