LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g4366	ATGGAGAGTAGTGTTGTGTTGTTGTGTTTGTGTTTATGGGTTTTACTCTTACTTGGGTGTTGTTTACATTCCTCAGAATCCAAGTACATAAGGTACAACACTACTTCAACCACTGTTCCTGGGAAGCTCAATGTTCACTTGGTTGCTCACACTCATGATGATGTTGGATGGTTGAAGACAGTTGATCAGTACTATGTTGGTTCCAACAACTCCATTCAGGGAGCGTGCGTTCAAAATGTGCTTGATTCCATTGTACCGGCGCTGTTGGCGGATAAGAATCGCAAATTCATTTATGTTGAACAGGCATTTTTCCAGCGTTGGTGGAGAGAACAAAGTGAGGCTGTCAAGGACACAGTCAAGAAGCTGGTCAACTCTGGTCAATTAGAGTTCATCAATGGTGGTATGTGTATGCATGATGAAGCTGCTACGCATTACATTGACATGATTGATCAGACAACTCTTGGACATCGATTTATTAAAGAAGAATTTGGCATAACTCCAAGAATAGGATGGCAAATTGATCCATTTGGACACTCTGCAGTTCAGGCTTATTTGTTGGGAGCAGAGGTTGGATTTGACTCTCTATTCTTTGCCCGGATTGACTACCAAGACAGAGCTAAGAGAAAAGGTGAAAAAACTCTTGAAGTTGTGTGGCAAGGCTCCAAGAGCCTTGGTTCTTCTGCACAGATATTTTCTGGTGCGTTCCCTGAGAATTATGAGCCTCCCACCAGTAATTTCTACTATGAAGTAAATGACGATTCTGCAGTTGTTCAGGATGATGTAAATTTGTTTGATTACAATGTCCCTGACCGAGTAAATGAGTTTGTCTCAGCCGCAATATCACAGGCCAATATTACACGCACAAATCATGTAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCCCATACCTGGTTTCGGCAAATGGACAAGCTTATGCACTACGTTAATCAAGATGGTCGAGTTCATGCTCTATATTCAACCCCATCAATATATACTGATGCAAAACATGCTGCAAATGAGGCCTGGCCAATTAAGACTGATGATTTCTTTCCGTATGCTGATCGTGTAAATGCCTACTGGACGGGGTATTTTACAAGCAGGCCAGCCCTCAAAGGTTATGTCAGATTTCTGAGTGGCTACTACTTGGCAGCAAGACAGTTAGAGTATTTTAAAGGGAAGAGTGCCTTAGGTCCTAAAACGGACTCTTTGGCTGATGCTTTGTCTCTTGCTCAACACCATGATGCAGTATCTGGTACATCAAAGCAGCATGTGGCTAATGATTATGCAAAACGACTTTCAATAGGTTACACTGAGGCTGAGAAAGTTGTTGCAGCATCACTTGCTGGCTTGACAGAGGCAGCAACCAATACTGGTCGTAAGACTCCACAGATTAAATTTCAACAGTGCCCACTTCTGAATGTAAGTTACTGTCCTGCATCAGAAGTTGGCTTCTCAGATGGGAAAGACCTGGTTGTTGTCATTTACAATCCCGTTGGATGGAAAAGAGAGGATATTATAAGGATTCCTGTTGTCAATGAAAATGTTGTTGTTCGGGATTCCAGTGGAAAAGAAGTTCAATCCCAGTTGCTGCCAATACTAGATGCTTTTCTTGGTTTAAAAAACTACCACACTGCCGCATACCTTGGAGTGTCTGCAACTGTAAATGCTAAATATTGGCTTGCTTTTTCAGCAACTGTTCCCCCACTTGGTTTCAGTACTTACTATGTATCCAATGCCAAAAAATCAGCTACTATTTCAGATAGACATACAGCATACAGGTCAGGTAATCAGAATGATACATTTGAAGTGGGCCCAGGAAACTTGAAACTAGTTTATTCTGGGATTCAAGGGAAACTTACTTATATCAACAACAGAAGCAAGGTTCAAGAATCTCTAGAGGAGGCGTACAAGTATTACTCCGGGTATGGAAATGATAGAACAGAAACTTCTCAGGCTTCTGGAGCATATATTTTTCGCCCCAATGGTTCATCATCTCCCATCAAACCCGACGTTGAGTCTCCTCTCACAGTTTTACGGGGACCAATTGTGCATGAAGTGCATCAGAAGATCAATTCATGGATATACCAGACCACAAGGCTGTACAAGGGGAAGGACCATGCTGAAGTTGAGTTTATTGTTGGACCTATACCCATTGATGATGGAGTTGGCAAAGAAATTGCAACTGAGATTAAAACAACACTGGCAAGCAGCAAAACCTTTTATACTGATTCCAATGGACGTGATTTCATTGAACGGGTTCGAGACTATAGAAAAGACTGGGACTTGGAAGTAAATCAACCTGTTGCTGGAAATTATTACCCTATCAACCTTGGGATATACCTGAAAGATAAAAGCAAAGAATTTTCTGTATTGGTAGATAGGTCTGTGGGGGGCTCCAGCATCCTAGATGGGCAAGTGGAGCTAATGGTTCACAGGAGATTACTTCAGGATGATTCCAGAGGTGTTGCAGAGGCACTGAATGAAACGGTTTGCATCCAGAATAAGTGCACCGGGTTAACTGTTCTAGGGAAGTACTATTTCAGAATCGATCCTGTAGGAGAGGGTGCTAGATGGCGTCGATCATTTGGTCAGGAGATATACTCACCGTTTCTTTTAGCCTTCACAGAGAGTGATGGTAACTGGGGAGATTCTCATGTCACCACGTTCTCTGGACTAGATCCCTCATACAGCTTACCAGATAATGTTGCAATTATAACCCTCGAGGATCTTGGTGATGGAAAAGTTCTTCTTCGGCTAGCACACTTATATGAGATTGGCGAGGACAAGCATCTCTCAGTTAAGGCAAGTGTAGAACTTAAGAAGGTGTTCCCTTATAAACAGATACAAAAAATAACTGAGGCGAGCTTATCAGCTAACCAAGAAAGAGCAGAAATGGAGAGGAAGCGATTAGTCTGGCAAGTCAAAGGATCAACTCCAGAACCCCAAGTTTCAAGGGGAGGACCAGTTGATCCAGATAAGCTAGTTGCAGAACTTGCTCCCATGGAAATAAGGACCTTCATTATCAGTTTTAGGCACTAA	3048	0.4236	MESSVVLLCLCLWVLLLLGCCLHSSESKYIRYNTTSTTVPGKLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPALLADKNRKFIYVEQAFFQRWWREQSEAVKDTVKKLVNSGQLEFINGGMCMHDEAATHYIDMIDQTTLGHRFIKEEFGITPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRAKRKGEKTLEVVWQGSKSLGSSAQIFSGAFPENYEPPTSNFYYEVNDDSAVVQDDVNLFDYNVPDRVNEFVSAAISQANITRTNHVMWTMGTDFKYQYAHTWFRQMDKLMHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTDDFFPYADRVNAYWTGYFTSRPALKGYVRFLSGYYLAARQLEYFKGKSALGPKTDSLADALSLAQHHDAVSGTSKQHVANDYAKRLSIGYTEAEKVVAASLAGLTEAATNTGRKTPQIKFQQCPLLNVSYCPASEVGFSDGKDLVVVIYNPVGWKREDIIRIPVVNENVVVRDSSGKEVQSQLLPILDAFLGLKNYHTAAYLGVSATVNAKYWLAFSATVPPLGFSTYYVSNAKKSATISDRHTAYRSGNQNDTFEVGPGNLKLVYSGIQGKLTYINNRSKVQESLEEAYKYYSGYGNDRTETSQASGAYIFRPNGSSSPIKPDVESPLTVLRGPIVHEVHQKINSWIYQTTRLYKGKDHAEVEFIVGPIPIDDGVGKEIATEIKTTLASSKTFYTDSNGRDFIERVRDYRKDWDLEVNQPVAGNYYPINLGIYLKDKSKEFSVLVDRSVGGSSILDGQVELMVHRRLLQDDSRGVAEALNETVCIQNKCTGLTVLGKYYFRIDPVGEGARWRRSFGQEIYSPFLLAFTESDGNWGDSHVTTFSGLDPSYSLPDNVAIITLEDLGDGKVLLRLAHLYEIGEDKHLSVKASVELKKVFPYKQIQKITEASLSANQERAEMERKRLVWQVKGSTPEPQVSRGGPVDPDKLVAELAPMEIRTFIISFRH*	1016

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g4366	1015	Gene3D	Glycoside hydrolase 38, N terminal domain	43	324	IPR027291	-
	Lja1g4366	1015	SUPERFAMILY	Glycoside hydrolase/deacetylase	32	357	IPR011330	GO:0005975
	Lja1g4366	1015	Gene3D	-	482	604	IPR013780	-
	Lja1g4366	1015	Pfam	Glycosyl hydrolases family 38 C-terminal domain	608	823	IPR011682	GO:0004559\|GO:0006013
	Lja1g4366	1015	Gene3D	Glycoside hydrolase family 38, central domain	325	403	IPR037094	GO:0004559\|GO:0006013
	Lja1g4366	1015	Gene3D	Glycoside hydrolase family 38, central domain	404	459	IPR037094	GO:0004559\|GO:0006013
	Lja1g4366	1015	Gene3D	-	605	871	-	-
	Lja1g4366	1015	Coils	Coil	951	971	-	-
	Lja1g4366	1015	CDD	GH38N_AMII_LAM_like	43	320	-	-
	Lja1g4366	1015	SUPERFAMILY	Galactose mutarotase-like	467	1013	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Lja1g4366	1015	Gene3D	-	889	1015	-	-
	Lja1g4366	1015	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	360	453	IPR028995	-
	Lja1g4366	1015	SMART	Alpha_mann_mid_2	361	435	IPR015341	GO:0004559\|GO:0006013
	Lja1g4366	1015	Pfam	Alpha mannosidase middle domain	361	451	IPR015341	GO:0004559\|GO:0006013
	Lja1g4366	1015	PANTHER	ALPHA-MANNOSIDASE	17	1014	-	-
	Lja1g4366	1015	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	904	1010	IPR041147	-
	Lja1g4366	1015	Pfam	Glycosyl hydrolases family 38 N-terminal domain	44	356	IPR000602	GO:0004559\|GO:0006013
	Lja1g4366	1015	PANTHER	ALPHA-MANNOSIDASE	17	1014	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g4366	Lja-Chr1	56386640	56395789	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g4366	10	927	Glycoside Hydrolase	AT5G13980	70.302	0.0	1359

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g4366	K01191		-	gmx:100798150	1780.38

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g4366	1	56386640	56395789	Lja1g4366	1	56386640	56395789	ECH