Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4340 ATGAAGAGGAAGAGAGAAGCCAACAAGGAAGAAGCCATGGATATCGTGTGGCAAACCCCAGCGAATCCACCACTACCGCAAGATTACATATTCCGAAACGGGTTTCGATTTGTTAGACCTTACTACTTCGAATTCATTGCTCATGTCAAAAATCGTTGGGCTGGGAAAACCATTGTTGATTTGTTCGCTGAGGAGTTCAAAGGTCGACCTTATGAATATTATGTTAGTGCAGTGAAATGCGGAAGGATTCAAGTTGATGGGGAGATGGTACCGGTTTCATACGTGGTTAAATCATCTCAAAAGATAAGCCACTTTTTGCACAGGCATGAACCACCTGTGATGGCTGGCGGTGTTTCTATTCTTCAAAACGAACCGGATGTGCTAACTGTTTGTAAACCGGCATCTGTCCCGGTGCATCCATGTGGTCAATATCGTAAGAACACTGTTGTTGGCATCCTCCAAGCAGAGCATGGATTGGCACCTCTATTTCCTATTCATCGACTGGATCGCCTTGTCTCAGGACTTCTTATTTTAGCCAGAAATGCTACAAAAGCTGACAATTTTAGGCAACAGATTGAAGCTGGCTTAGTCCAGAAACAGTATATAGCGAAAGTCATTGGAGAATTTCCGAAGGATGAGCTAATTGTTGATGCCAACATAGACTATAATGCTCGAGAAGGAAGGAGCACAGCAGAGGCCAGAGAGTCTGCAAAGGGGAAGACTGCCTCTACAAAATTTACTCGGATTAGTACCAATGGTACTCAAAGTATTGTTTTATGTGAACCAGTCACTGGCCGTACACATCAGATACGTGTTCATTTACAGTATTCGGGACATCCAATAGCCAATGACATGCTATACATTTCAGAGCAACCTATTGACCGACATATTAAAGGCTCAGGTGCCGATAGATCAGCTCGTTTATCTAATGCTTCTCTAACATCAAATTTTGATGAAGTGCTCAATGAATTTGAAGAAAATTCCAACGGGGATTTTGGTGTTGATTCCATGTGTACAAACTGTCCAAATTTGGCACCCAAAGGGTATGACGGCGATGAAGAAGGTCTGTGGCTACATTGTTATCGGTACTCTGGACCGGGATGGACGTATGAATGCCCGTATCCTGATTGGGCGAAGCTTAGCTAG 1146 0.4354 MKRKREANKEEAMDIVWQTPANPPLPQDYIFRNGFRFVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYYVSAVKCGRIQVDGEMVPVSYVVKSSQKISHFLHRHEPPVMAGGVSILQNEPDVLTVCKPASVPVHPCGQYRKNTVVGILQAEHGLAPLFPIHRLDRLVSGLLILARNATKADNFRQQIEAGLVQKQYIAKVIGEFPKDELIVDANIDYNAREGRSTAEARESAKGKTASTKFTRISTNGTQSIVLCEPVTGRTHQIRVHLQYSGHPIANDMLYISEQPIDRHIKGSGADRSARLSNASLTSNFDEVLNEFEENSNGDFGVDSMCTNCPNLAPKGYDGDEEGLWLHCYRYSGPGWTYECPYPDWAKLS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4340 381 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 12 380 - -
Lja1g4340 381 SUPERFAMILY Pseudouridine synthase 119 378 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja1g4340 381 PANTHER PSEUDOURIDINE SYNTHASE 12 380 - -
Lja1g4340 381 ProSitePatterns Rlu family of pseudouridine synthase signature. 165 179 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja1g4340 381 Pfam RNA pseudouridylate synthase 127 275 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja1g4340 381 CDD PseudoU_synth_ScRIB2 103 379 - -
Lja1g4340 381 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 52 293 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lja1g4340 381 Gene3D Pseudouridine synthase 113 366 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4340 K15454 - gmx:100811500 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4340 1 56047750 56055342 Lja1g4340 1 56047750 56055342 ECH