Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4333 ATGGAAGTCCTGAAAGACCCGAATTCAAACCCGGGTCGGACCGACGATTCCGAATCTGAGCTCGAACTCTACACTATTCCAAGCTCTTCCAAATGGTTCGCGTGGGACGAGATTCACGAAACGGAGAGAACAGCGTTGAAGGAGTTCTTCGATGGAACCTCGATTTCAAGAACGCCCAAGGTATACAAAGAGTACAGGGATTTCGTGATCAACAAGTACAGGGAAGATCCTTCAAGGAAGCTCACGTTTACCGAGGTGCGGAAATCGCTGGTGGGCGATGTCACGCTCCTCCGCAAGGTTTTCCTCTTCTTGGAGAGCTGCGGTTTGATCAACTACGGCGTTGGGGAGGCGGAGAAGGAGGAGGAGAGGGAGGATGAGGAGGAGGGGGAGGGGGAGAGGTGTAAGGTTAGGGTTGAGGAAGGAGCGCCTAATGGGATCCGTGTGGTGGCTACGCCGAATTCGTTGAAGCCTCTTTCGGCGCCTCGCAATGCGAAGAGTGGTGGTGGTGGTGGTGGTAGTGTGAGTGGTGGTGCTGGGGTTAAGTTGCCGCCGCTGGCGTCGTTCGCGGATGTTTATGGCGATTTAATGAGTGCTAAGGAGTTGAATTGTGGGATTTGCGGTGATAAGTGTGGTTTTGAACATTACAGAAGCACCAAGGACAATTTCACTATTTGTATGAAATGTTTCAAAAATGGGAATTATGGGGAGAAAAGGTCTGTGGAGGATTTCATATTAAACGAGTCAAACGAAAATAGTGTCAAACAGAGCACTGTCTGGACTGAGGGAGAAACTCTTCTCCTTTTAGAATCTGTTTTGAAGCATGGAGATGACTGGGAACTCGTTGCTCAAAGTGTTCAAACCAAGACTAAACTTGATTGTATTTCAAAACTCATTGAGCTGCCTTTTGGGGAGCTCATGTTAGGCTCTGCTCACAGAAATGACAACATTAATATTGCTAATGGCATTGTCAATAATGCAATACAAGTTCAGTCATCTTCTTCTGATCATCAAGAAACCTCAAAGACACAGAATCAAACTCCTGAGCTTACAAGTGAAAAAGAGCCGAACGGAGATGCTGTGAATGAAAGTCCCTCAAAAAGACAGCGTGTTGCTGCCCTTTCCGAGTCCAGCAGTTCACTAATGAAGCAGGTGGGTTTGATTTCTACTTCGGTTGACCCTCACATCACAGCTGCTGCCGCTGATGCTGCTATTACAGCACTCTGTGATGAAAACTTGTGTCCAAGGGAGATATTTGATGTTGAAGAGGACTATGCTTCCAGTGCAAACTCTCTAATTAGTGATTCAGAAAGAGCCCATGAGGTTGAAGGTTTAGAGATGGATAGGTCCACTCAGGCAGAAAAAGATGACAGAGGCCCAAAGGATGACATACCATTGCCCCTGCGCTTAAGAGCTGGCATTGCAACTGCTCTTGGAGCTGCTGCTGCTAGAGCTAAGTTAATGGCGGACCAGGAAGACAGAGAGATTGAACATTTAGTGGCAACTATAATTGAAGCACAGATTGGTAAATTGCAACACAAGGTTAAACATTTTGACGAGCTGGAGTTGTTGATGAAAAAGGAACATGCTGAAATAGAAGAGCTAAAAGATTCTATCTTGACTGAGCGGATTGATGTGCTGCAGAAGACATTTAGATCTGGAATCACTAGATGGAAGGATTATTCTTACGTAAAATCTTAG 1698 0.4605 MEVLKDPNSNPGRTDDSESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPKVYKEYRDFVINKYREDPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINYGVGEAEKEEEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSAPRNAKSGGGGGGSVSGGAGVKLPPLASFADVYGDLMSAKELNCGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSVEDFILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIELPFGELMLGSAHRNDNINIANGIVNNAIQVQSSSSDHQETSKTQNQTPELTSEKEPNGDAVNESPSKRQRVAALSESSSSLMKQVGLISTSVDPHITAAAADAAITALCDENLCPREIFDVEEDYASSANSLISDSERAHEVEGLEMDRSTQAEKDDRGPKDDIPLPLRLRAGIATALGAAAARAKLMADQEDREIEHLVATIIEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILTERIDVLQKTFRSGITRWKDYSYVKS* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4333 565 Pfam Myb-like DNA-binding domain 258 297 IPR001005 -
Lja1g4333 565 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g4333 565 Gene3D - 255 303 - -
Lja1g4333 565 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 20 556 - -
Lja1g4333 565 Pfam SWIRM domain 27 112 IPR007526 GO:0005515
Lja1g4333 565 ProSiteProfiles SWIRM domain profile. 24 121 IPR007526 GO:0005515
Lja1g4333 565 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Lja1g4333 565 Coils Coil 517 537 - -
Lja1g4333 565 MobiDBLite consensus disorder prediction 155 176 - -
Lja1g4333 565 SMART sant 255 303 IPR001005 -
Lja1g4333 565 Pfam SWIRM-associated region 1 475 549 IPR032451 -
Lja1g4333 565 SUPERFAMILY Homeodomain-like 254 312 IPR009057 -
Lja1g4333 565 MobiDBLite consensus disorder prediction 429 463 - -
Lja1g4333 565 CDD SANT 259 296 IPR001005 -
Lja1g4333 565 MobiDBLite consensus disorder prediction 330 374 - -
Lja1g4333 565 MobiDBLite consensus disorder prediction 1 22 - -
Lja1g4333 565 ProSiteProfiles SANT domain profile. 254 305 IPR017884 -
Lja1g4333 565 MobiDBLite consensus disorder prediction 435 463 - -
Lja1g4333 565 Gene3D - 30 116 IPR036388 -
Lja1g4333 565 PANTHER SWI/SNF COMPLEX-RELATED 20 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4333 Lja-Chr1 55969496 55975230 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4333 K11649 - gmx:100790238 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4333 1 55969496 55975230 Lja1g4333 1 55969496 55975230 ECH